Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2472 ATGATGGCCGTAAGCCGAAAGGACATGGACCGGATCAAGGGTCCATGGAGCCCTGAAGAGGATGAGGCTTTGCAGAAACTGGTGGAGAGGCACGGGCCCAGAAACTGGTCGCTCATAAGCAGGTCAATCCCGGGCCGCTCTGGAAAATCGTGCAGGCTCCGGTGGTGCAACCAGCTGTCACCACAGGTCGAGCACCGGGCTTTCACGCCCGAGGAGGACGACACCATAATCCGGGCTCATGCTCGCTTCGGTAACAAGTGGGCCACCATAGCCCGCCTTCTCTCGGGTCGCACCGATAACGCCATCAAAAACCACTGGAACTCAACCCTAAAGCGCAAGTGCTCCTCCATCATGAACGCAGAAGATCCCGCCGCTGCCGCTGCCGGTTACAGCCCGCAACCGCTCAAGCGCTCCGTCAGCGCCGGCGCAGCCCTTCCCCCGGGAAGCCCCTCAGGATCCGATGTGAGCGAGACCAGCGCCCCAGGCGTAGTCTCCCCATCGCACGTGTTCCGGCCCGTGCCGGTTCGACCTGTGGTCGAAACGGCGTCGTCGTGCGAAGACGACGGCCCTACTACTTCACTGTCGCTGTCTCTTCCCGGAGTGGAGTCATCGGAAGCCTCGAATCGGGCGACGGCGATGCAAGCTAATCCCTTCGCGATAGGGCCGGTGACGAACGTTGCCATTCCGGCGGCGGAGGTTGGGATGGGAGCCTTGAATTTGAGTGCGGAGTTTATGGCGGTGATGCATGAGATGATAAAGAAGGAGGTTCGGAGTTACATGGAGCAGCAGAGTGGGATGTGTTTTCAGGGCGTGGACGGGTTTAGGAATGCGTCGGTGAAGCGAATTGGGATTAGCAGGGTTGATTCCTAA 870 0.5989 MMAVSRKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMNAEDPAAAAAGYSPQPLKRSVSAGAALPPGSPSGSDVSETSAPGVVSPSHVFRPVPVRPVVETASSCEDDGPTTSLSLSLPGVESSEASNRATAMQANPFAIGPVTNVAIPAAEVGMGALNLSAEFMAVMHEMIKKEVRSYMEQQSGMCFQGVDGFRNASVKRIGISRVDS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2472 289 Gene3D - 66 128 - -
Pvu3g2472 289 MobiDBLite consensus disorder prediction 1 20 - -
Pvu3g2472 289 CDD SANT 15 57 IPR001005 -
Pvu3g2472 289 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Pvu3g2472 289 PANTHER MYB PROTEIN-RELATED 2 262 - -
Pvu3g2472 289 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Pvu3g2472 289 MobiDBLite consensus disorder prediction 180 199 - -
Pvu3g2472 289 Gene3D - 12 64 - -
Pvu3g2472 289 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
Pvu3g2472 289 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Pvu3g2472 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Pvu3g2472 289 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Pvu3g2472 289 SMART sant 64 112 IPR001005 -
Pvu3g2472 289 SMART sant 12 61 IPR001005 -
Pvu3g2472 289 CDD SANT 67 110 IPR001005 -
Pvu3g2472 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Pvu3g2472 289 MobiDBLite consensus disorder prediction 185 199 - -
Pvu3g2472 289 MobiDBLite consensus disorder prediction 137 168 - -
Pvu3g2472 289 PANTHER MYB TRANSCRIPTION FACTOR 2 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2472 Pvu-Chr3 46311343 46313013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2472 5 288 MYB Transcription Factor Family AT4G37260 52.160 3.55e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g2472 Myb_DNA-binding 5.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0153 2 1692701 1694639 Pvu3g2472 3 46311343 46313013 ECH
Pvu9g0700 9 11618726 11620806 Pvu3g2472 3 46311343 46313013 ECH
Pvu1g0257 1 2276980 2278706 Pvu3g2472 3 46311343 46313013 ECH
Pvu3g2472 3 46311343 46313013 Pvu3g2472 3 46311343 46313013 ECH
Pvu3g2472 3 46311343 46313013 Pvu2g0153 2 1692701 1694639 PCT