Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2072 ATGGGTTTTTCCTCTCTCCACGTCTGCATGAACTCATCAGAACAATGGCTGCAGGGCACAATTCACGAAGAGAGTAGGGTGGATTCTTCTTCACCATCAGGCGACATGCTTCCATGCTCGAGACCGATGACAGAGAGGAGGCTAAGACCCTCACAAGATCAAGCCCTCAAGTGCCCTAGGTGTGAATCAACACACACCAAGTTCTGCTACTACAATAACTACAGTCTCACTCAGCCCAGGTACTTCTGCAAGACATGTAGAAGGTACTGGACCAAAGGAGGCACTCTTCGGAACATTCCTGTTGGAGGAGGTTGCAGGAAGAACAAGAAAGTTTCTATTAAGAAACATAATGACCACCAACCAGCTATTAATCAAAACCAAACACAACCTGCAGGACCCTCTTATATTCATAATCATAAAGATCTTCAACATTCCTTCTTGGATGTGCAGTTTTCCCACCTTAACAATTTACTGGGGACTAATGCTGGGGTACTGGGAAACCCTAATTTCATGGATAGTAAGTATAGCATGGGAATGCTAGAGAACCCTGGGCCTATTGACTTCATGGAAAGCGGGTTGGATGGTATGAATATGATTGGGGGTTCTACTAGGAATTTGGATCTTGTTGAAAATAGTGATATGAGTGTGGGTGGTGGTGTTGGGCTTGGTGATATGAGTGGCGCCTACAATGGATTACCATTAAATTATCAAGGTCTTTCTACTGCAGCATTTGGAGGCATGTCCCTTGATGGAAGCATCAGCAATGTTGGAACTTATATAATGGACTCTTGCCAGCGACTTATGTTGCCCTATGAGGGAGGTCATAACATCCTTAACGGTTCTATTGATGTGAAGCCAAACCCTAAGCTGTTGTCCCTTGAATGGCATGATCAGGGTTGCTCTGATGCTGAAAAAGTGTCGTTGGGATACCTTAATGGAGGATCATGGAGCGGCTATGGATCTTCTACAACAAACCCTTTGGTCTAG 987 0.4478 MGFSSLHVCMNSSEQWLQGTIHEESRVDSSSPSGDMLPCSRPMTERRLRPSQDQALKCPRCESTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSIKKHNDHQPAINQNQTQPAGPSYIHNHKDLQHSFLDVQFSHLNNLLGTNAGVLGNPNFMDSKYSMGMLENPGPIDFMESGLDGMNMIGGSTRNLDLVENSDMSVGGGVGLGDMSGAYNGLPLNYQGLSTAAFGGMSLDGSISNVGTYIMDSCQRLMLPYEGGHNILNGSIDVKPNPKLLSLEWHDQGCSDAEKVSLGYLNGGSWSGYGSSTTNPLV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2072 328 MobiDBLite consensus disorder prediction 22 37 - -
Pvu3g2072 328 PANTHER - 12 319 - -
Pvu3g2072 328 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Pvu3g2072 328 Pfam Dof domain, zinc finger 53 110 IPR003851 GO:0003677|GO:0006355
Pvu3g2072 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 319 IPR045174 GO:0003700|GO:0006355
Pvu3g2072 328 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Pvu3g2072 328 MobiDBLite consensus disorder prediction 22 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2072 Pvu-Chr3 41410491 41412765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2072 1 300 C2C2-Dof Transcription Factor Family AT5G62940 39.169 1.90e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu3g2072 zf-Dof 4.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2072 - - gmx:100815061 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2072 3 41410491 41412765 Pvu9g1841 9 26082689 26084869 PCT