Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1889 ATGGGAAGAGGGAGGGTTGAACTCAAGAGGATAGAGAACAAAATCAACAGGCAAGTCACATTTGCCAAGAGAAGAAATGGCTTGCTCAAGAAGGCCTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCAGCAGCACCTCAAGTATGGTGAAAACACTGGAGAAGTACCAAAAGTACAGTTACAGTGCACTGGAGACCACCCGACCAATTAACGACATTCAGAACTACCAGGAATATTTGAGATTAAAAGCAAGGGTAGAAATCTTGCAACGTTCACAAAGGAACCTACTTGGGGAAGATCTTGCCCAAATGAATACAACTGATCTTGAGCAGCTAGAGAATCAACTAGAGACAGCACTGAAGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTGGCTGATCTTCACCACCGGGAAACGTTACTTGTTGAAACTAATAATGTGTTAAGGAGTAAGTTGGAAGAAACTAATAACTCACAAGTTCCAGTGAGTCTAGCTTTGGAAGCTGGAGGGTCTAACATCCATTACACAAACTTTCCTCCTCAATCAGAGGGGTTCTTCCAGGCAATGGGAGTGAATCCCAACTTGCAAATTGGATTCAACCAGATTGGTCCTGATGATGCAAACGTTGGAGCTTCATCCTTGAGTATGCATGGATTCGCCTCTGGGTGGATGCTTTGA 732 0.4413 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMVKTLEKYQKYSYSALETTRPINDIQNYQEYLRLKARVEILQRSQRNLLGEDLAQMNTTDLEQLENQLETALKNIRSTKTQFMLDQLADLHHRETLLVETNNVLRSKLEETNNSQVPVSLALEAGGSNIHYTNFPPQSEGFFQAMGVNPNLQIGFNQIGPDDANVGASSLSMHGFASGWML* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1889 243 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu3g1889 243 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 230 - -
Pvu3g1889 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
Pvu3g1889 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pvu3g1889 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu3g1889 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu3g1889 243 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Pvu3g1889 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu3g1889 243 Coils Coil 116 143 - -
Pvu3g1889 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu3g1889 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu3g1889 243 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pvu3g1889 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu3g1889 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu3g1889 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1889 Pvu-Chr3 39436737 39441349 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu3g1889 K-box 1.5e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1889 3 39436737 39441349 Pvu9g2098 9 30080599 30089684 ECH
Pvu8g0285 8 2315794 2321854 Pvu3g1889 3 39436737 39441349 ECH
Pvu3g1889 3 39436737 39441349 Pvu3g1889 3 39436737 39441349 ECH