Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1882 ATGCAGCAAATACACTCCATGGCACCGGGAACGGGAGGAGGAGGAGCAGGAGGAGGACCCAGGTTTTTCTCCGCCACCGCCACCGCCGACAGGAGGCTCCGACCCCACCACCAGAACCACCAGGCGCTTAAGTGCCCCCGCTGTGATTCTCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCCCGCCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAAGGGGGCGTCCTCCGCAACGTCCCGGTCGGAGGCGGCTGCCGCAAATCCAAACGCTCCAACAAACCCGCCAAAACCTCCGACACCGCCCCTCCTCCCCCGCTGCCCGACCCCGACCATTCAAGCAGCGAGAGCTCGAGCCTCACCGCCGCTGCCGCGGAGCCAGTATCGGCGCCGATAAACTCCGATTCCACGAACGTGCAAGAGTCGAAGTTGTTGGTCCCCGCGGATCCTGTTTTGGAAACGAATCCTCTGGAGCAAGGAGCAGGGGACTGCGGTGGTATCTTCTCCGAGATTGGACCTTTCACCAGCCTGATCGCTACTTCAACTAACGAGCCATTGGCTTTCGGTTTCGGGAACGCTCTGCCCGATGCGTCGTCGTTTCAGTGGCAGAACTCGAAGGTGACCAGCAACCAGGAATTGAAGTTGCCCGAAAGCTCCTTCCTCGATCACACCGTTGATTTGACGACTATGCATGGTAAAACGAGCCACGGAACATTCGGATCGTTGGATTGGCAGGGCGGTGCGGATCAAGGTTTGTTTGATCTCCCTAACACCGTTGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTTCTCTCTTTCATCTCCCCTGA 864 0.5775 MQQIHSMAPGTGGGGAGGGPRFFSATATADRRLRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPAKTSDTAPPPPLPDPDHSSSESSSLTAAAAEPVSAPINSDSTNVQESKLLVPADPVLETNPLEQGAGDCGGIFSEIGPFTSLIATSTNEPLAFGFGNALPDASSFQWQNSKVTSNQELKLPESSFLDHTVDLTTMHGKTSHGTFGSLDWQGGADQGLFDLPNTVDHAYWSHTHWSDHDNSSLFHLP* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1882 287 MobiDBLite consensus disorder prediction 118 145 - -
Pvu3g1882 287 PANTHER DOF ZINC FINGER PROTEIN DOF5.4 1 278 - -
Pvu3g1882 287 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Pvu3g1882 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 278 IPR045174 GO:0003700|GO:0006355
Pvu3g1882 287 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Pvu3g1882 287 MobiDBLite consensus disorder prediction 88 145 - -
Pvu3g1882 287 MobiDBLite consensus disorder prediction 1 23 - -
Pvu3g1882 287 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1882 Pvu-Chr3 39382825 39384177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1882 30 284 C2C2-Dof Transcription Factor Family AT5G60850 44.637 2.67e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu3g1882 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1882 - - pvu:PHAVU_003G182100g 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1882 3 39382825 39384177 Pvu9g2104 9 30151578 30153734 PCT