Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1833 ATGTATTCCTCAAATACCTCCCTCAACGGCAATGACCTACTCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACAAATTCCTCAAAAGACCAATCCAATTCCAATTACGCCCTTCCTCCTCTTCCTCCTCCTTTCTCCTTTCTCCAGTCCTTTGACGAAAATATCTTTCTCGAACACCACCATGACCTGCTTTTACTTCACCAGTCTCTAGCTGACCCCGGAATCTCCAGAAACCTCGACGTTGCTGCCGAAATCGCGCCAATTCCTTGCTTTGGACAAGGTGGCAATTCCTTCCTCGACGTCCCTATGGAGCACACTGCCAGGAAGAGATCCAGCAAGAGAGATCGTCACAGCAAAATCAACACCGCACGAGGCCTCAGAGACCGAAGAATGAGGTTGTCCCTCGAAGTTGCAAAGAGGTTCTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTCGAGTGGCTACTAGACCAAGCAAAAGTTGAAATCAAACAACTTGCAAGGGAAAAAAACAGTGCTGGTGGTGCCAAGGGTGCATCATCAACTTCTGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGCAGTGAGTGGAGTTAACGAGGAGCAGGAAAGGGAGACACCCAACATGAAGAGAAGAACAAGTAAGGTTTGTAGAAAGACTGCATTCAATACTACGGATAAGGAATCGAGGGAAAGGGCAAGAGAAAGGGCGAGAGAAAGAACAAGAGAGAAGATGAGGAGTCGGAGACTACTTGCTGCAGATGCTTCAAACCTTAACCCTTTGAGTTCTTGGAACCCCTTTGAAACGGTTCAAGATTCTCCGGGTACTCAGAGCCAAAGCGTGAACCACCCCTCCTTGGATGTGCACCTTCCTGAGCCTGAAGAACCAACTTCTCACGCAAAGGAACATTTGGGCACCGTGGAGGACATAGCGCCGCATGAAGTTAATTCTTTCGTGATCATGAACAAGTGGAGCCCAACCATGGTATTCAATTCTCTCAACAACTCAGCAATCCTTCACGAACATCAGTTTGCGGAATTTCAGTCTTTCGGAAAACCTTGGGAAGCCTACAACGATCACATCTAG 1128 0.4787 MYSSNTSLNGNDLLSYPNQPFCFRPFSFESNPTNSSKDQSNSNYALPPLPPPFSFLQSFDENIFLEHHHDLLLLHQSLADPGISRNLDVAAEIAPIPCFGQGGNSFLDVPMEHTARKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLDQAKVEIKQLAREKNSAGGAKGASSTSECEGVSSLDEVAVSGVNEEQERETPNMKRRTSKVCRKTAFNTTDKESRERARERARERTREKMRSRRLLAADASNLNPLSSWNPFETVQDSPGTQSQSVNHPSLDVHLPEPEEPTSHAKEHLGTVEDIAPHEVNSFVIMNKWSPTMVFNSLNNSAILHEHQFAEFQSFGKPWEAYNDHI* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1833 375 MobiDBLite consensus disorder prediction 211 226 - -
Pvu3g1833 375 MobiDBLite consensus disorder prediction 270 299 - -
Pvu3g1833 375 ProSiteProfiles R domain profile. 241 258 IPR017888 -
Pvu3g1833 375 Pfam TCP family transcription factor 120 261 IPR017887 -
Pvu3g1833 375 PANTHER TRANSCRIPTION FACTOR TCP18 15 338 - -
Pvu3g1833 375 MobiDBLite consensus disorder prediction 182 314 - -
Pvu3g1833 375 MobiDBLite consensus disorder prediction 235 264 - -
Pvu3g1833 375 ProSiteProfiles TCP domain profile. 121 179 IPR017887 -
Pvu3g1833 375 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 338 IPR005333 GO:0003700
Pvu3g1833 375 Coils Coil 169 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1833 Pvu-Chr3 38915081 38919278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1833 9 262 TCP Transcription Factor Family AT1G68800 39.777 2.93e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu3g1833 TCP 1.6e-44 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0209 8 1767656 1769721 Pvu3g1833 3 38915081 38919278 ECH
Pvu9g2070 9 29708357 29710342 Pvu3g1833 3 38915081 38919278 ECH
Pvu3g1833 3 38915081 38919278 Pvu3g1833 3 38915081 38919278 ECH