Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1657 ATGGCATCACCATCAGAACTAAGTCTGGATTGCAAGCCCCAAAGCTATTCCTTGCTACTCAAATCATTTGGAGATCAAACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTAGAGGAAGAACGTCTCAAGATTGACGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCCATGGAGGCTTCAAGACAGCAACTTCAAGCCTTTAAAGTAAACCATGGCGCAAAGCCAGTTCTTGAAGAATTCATACCCATGAAGCACTTAGCCTCAGAAAGCTCAGAGAAGGCAATAAACATGTCTGACAAGGCAAACTGGATGACGTCTGCGCAACTGTGGAGCCAAGCCAGTGAAGGAACCAAACAACAACCAACATTAACATCACCCAAAGAAGCTGATATAGGGTTCAGCATCAGCCCCAAGCTGGCTCTAGACAGCAAACAGAGGAACGGTGGAGGAGCCTTCCTTCCATTCTCAAAGGAGAGAAACTCCTGCCAAGGCTCTACATTGCGGCCTCTACCTGAACTGGCCCTTGCCTCTTCGGAGAAAGAAATGGAGGACAAGAAACGTGCAGAGGTAGAAAAGGGAGTTTCGTGTCAGAACAAGAAGGAGAATTCAGGCAGTGATGGAGCTGTGGTTGATCAAGGAAAAAGTGGTAGCCCAGTTGCATCATCTCTTGCACAAACAACAACAACCACTGCTCAAACTCATAGGAAAGCTAGAAGGTGCTGGTCACCAGACTTGCACCGTCGATTTGTTAATGCTCTCCAGATGCTTGGTGGATCACAAGTGGCAACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACTAGAAGACCCAGTCCAAGTCCTCAAGCGAGTTCAGCAGCTCCCCAGCTCGTGGTTCTGGGCGGAATCTGGGTCCCACCGGAATATGCCACTGCGGCACACACAGCCACCCCTACTCTTTACGGTGCCCACCCAACCTCTCACGCGCCTCCGCCACACTACTGCACCGCCACTCCTGTGCCTCAAGAATTCTACACTGCGGCGCCGCAGCAGCAGCTGCTTCCGCCTCCTCCACCGCACCACAACGCGCTGCACCACCTGCACATGTACAAGGCAGCGACACACGGCCATGGATCGCCGGATTCGGAAGTGCCTGGCTGCGGAGAGCGGTCGGAGAGCATAGAGGACGGGAAGTCGGAGAGTAGCAGCTGGAAAGGAGAGAGTGGGGAGAACGAAGGGGAGAGGAAAGGGATTGGTGAAGAGAGCAATGGGAGTGAAATCACTCTGAAATTCTAG 1353 0.5122 MASPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFKVNHGAKPVLEEFIPMKHLASESSEKAINMSDKANWMTSAQLWSQASEGTKQQPTLTSPKEADIGFSISPKLALDSKQRNGGGAFLPFSKERNSCQGSTLRPLPELALASSEKEMEDKKRAEVEKGVSCQNKKENSGSDGAVVDQGKSGSPVASSLAQTTTTTAQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQASSAAPQLVVLGGIWVPPEYATAAHTATPTLYGAHPTSHAPPPHYCTATPVPQEFYTAAPQQQLLPPPPPHHNALHHLHMYKAATHGHGSPDSEVPGCGERSESIEDGKSESSSWKGESGENEGERKGIGEESNGSEITLKF* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1657 450 Gene3D - 243 301 - -
Pvu3g1657 450 Coils Coil 33 53 - -
Pvu3g1657 450 Pfam Myb-like DNA-binding domain 246 297 IPR001005 -
Pvu3g1657 450 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 450 - -
Pvu3g1657 450 MobiDBLite consensus disorder prediction 392 450 - -
Pvu3g1657 450 MobiDBLite consensus disorder prediction 159 247 - -
Pvu3g1657 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 450 IPR044787 GO:0003700|GO:0006355
Pvu3g1657 450 Coils Coil 58 78 - -
Pvu3g1657 450 MobiDBLite consensus disorder prediction 205 244 - -
Pvu3g1657 450 SUPERFAMILY Homeodomain-like 241 302 IPR009057 -
Pvu3g1657 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 301 IPR017930 -
Pvu3g1657 450 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 244 299 IPR006447 GO:0003677
Pvu3g1657 450 MobiDBLite consensus disorder prediction 185 204 - -
Pvu3g1657 450 MobiDBLite consensus disorder prediction 407 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1657 Pvu-Chr3 36679993 36682850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1657 1 450 G2-like Transcription Factor Family AT2G03500 50.932 6.64e-133 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu3g1657 Myb_DNA-binding 9.7e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1657 3 36679993 36682850 Pvu3g1657 3 36679993 36682850 ECH
Pvu3g1657 3 36679993 36682850 Pvu9g2061 9 29585950 29588825 PCT