Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0371 ATGTCTTCCACTAAGAACAAGGGAAACGCTGTCGGCGCCAAAACGGCACGAGCGTGCGACAGCTGCATAAGAAATCGAGCGCGTTGGTACTGTGCCGCCGACGACGCGTTCCTCTGCCAAGCTTGCGACTCTTCCGTTCACTCAGCGAACCCGTTAGCGCGTAGACACCACCGCGTTCGCTTGAAAATCGTTTCACACATCGAAGCCAACAAGAAATCGTTTTCTGGAACGGGTAACGGTCCATCGTGGCACAAAGGGTTCACCAAGAAACCCCGAACGCCACGTCACGGGAAGAACGGTAATAAGGCTCTGAAGAATCCCTTCGATGTGGTACCCGAAGACACAAATTCGAACTCCCATGAAGAGAGCGTGGATGAGGTTCTTTATAGAGTGCCCGCAACTCCTTCGGCAGAGCAAGGGGTATCCGTGAGCGATGAGAGGAGAGTTGATTTGTTAGGATGTGAAAGCGCGTTTGAGATTGCGTTCAGTGCTGATGTTGAGAGTTTGTTGAGGGAGGGACTGGAGAGTGAGTGTGTGGGAATGGAAGAGTTGGGGCTGGTGGGTACCGATGAGGTGGAGGAGCATGCTTCGTGGGAGTGTTGTGTGGGTGGTGGGAACATGAAGGTGGAGGAGGAGGCGTATGAATTGGGATTTGATTGTGGGCATGAGCTGAATTTTTCTTTGACATGTGAAGAGGTTAAGGAAAAGGTTATTGGGTTGGATAAGAGGCAAGAAGTAGTGAAAGAAGATGATCAGCGAAAGAAGAAGAAGATCTTATTGTTGCGGTTAGATTATGAAGCTGTAATCACTGCTTGGACCAGCCAAAGATCCCTGTGGACTACTTCTCATAAACCAGACTTGGGCACCACGCAGTTCTGGCCTCATTGCATGAGAACGTGTGGAGTGGAGTTTGAGCATCGTAGTGGGGAATTATTTGGGTGTGATGCAGCAATGGCAGACGGTGGAAGAGAAGCAAGAGTGTCAAGATATAGAGAAAAGCGACGTAAAAGGTTGTTCTCGAAGAAAATAAGGTATGAGGTTCGAAAACTGAATGCGGAGAAAAGACCAAGAATGAAAGGGAGGTTTGTAAAGAGGCCTTCTTTAGCAACACCACCCATTTTTCCTTTGCTAAACAAAAAAGAAGAGAGAGTATAA 1155 0.4848 MSSTKNKGNAVGAKTARACDSCIRNRARWYCAADDAFLCQACDSSVHSANPLARRHHRVRLKIVSHIEANKKSFSGTGNGPSWHKGFTKKPRTPRHGKNGNKALKNPFDVVPEDTNSNSHEESVDEVLYRVPATPSAEQGVSVSDERRVDLLGCESAFEIAFSADVESLLREGLESECVGMEELGLVGTDEVEEHASWECCVGGGNMKVEEEAYELGFDCGHELNFSLTCEEVKEKVIGLDKRQEVVKEDDQRKKKKILLLRLDYEAVITAWTSQRSLWTTSHKPDLGTTQFWPHCMRTCGVEFEHRSGELFGCDAAMADGGREARVSRYREKRRKRLFSKKIRYEVRKLNAEKRPRMKGRFVKRPSLATPPIFPLLNKKEERV* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0371 384 CDD Bbox1_BBX-like 18 61 - -
Pvu3g0371 384 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Pvu3g0371 384 Pfam CCT motif 323 365 IPR010402 GO:0005515
Pvu3g0371 384 Pfam B-box zinc finger 16 58 IPR000315 GO:0008270
Pvu3g0371 384 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 371 - -
Pvu3g0371 384 SMART bboxneu5 14 61 IPR000315 GO:0008270
Pvu3g0371 384 ProSiteProfiles CCT domain profile. 323 365 IPR010402 GO:0005515
Pvu3g0371 384 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 371 - -
Pvu3g0371 384 MobiDBLite consensus disorder prediction 71 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0371 Pvu-Chr3 3615595 3617648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0371 5 365 C2C2-CO-like Transcription Factor Family AT1G25440 42.476 1.75e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pvu3g0371 zf-B_box 8.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0371 3 3615595 3617648 Pvu3g0371 3 3615595 3617648 ECH