Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0296 ATGAAAAATATGCAAGGCTTCAAGACAGCACAACCAAGTTCACAACTCTACTGCCACTCTTCGTTTTTGCTTCGGGGAAATGACGCCAACCGGAACCCAACCACCGGGTTGTGTGATCTTGGGGACCTTCACCATTCCTCTGCCGTTTTTCATCAAGAAGATGGGGTTGATTTAGGCTCAAGTTCAATGTACAGTGTGAAGTCAAACAATGTTGTTGGTGGCAGTAACATGCAATATGGGACATTGAGCACGAATGTTGGGTCTTCGGAGATTGGTTCAAGTGGGGGAGGGTGCATGGATACAGGGCTTCAACTGATGTACCACAAAGGAGTAGTTATGCCAACCTTGCCTTTGGGGAATGGTCATGTTGACAATTGGGCTGATTCAGGCATAGCGGATAATAGCCAGCATACTGATGATACTTCCACAGATATTGACACTGATGATAGAATCCAATGCAATAGAGTTAAGAATGGTTCGCGTATGGTTATGCACTCCAAGGATAAGACAAAGGTCAAACCTGAAGATCAGAAGACCCTTCGTAGACTGGCTCAGAATCGGGAGGCTGCAAAGAAGAGTCGGTTAAGGAAAAAGGCATATGTACAGCAATTGGAGAACAGCCGAGTCAAGCTTGTTCAATTAGAGCAAGAACTTCAACAAGCACGTCAGCAGGGTATATGTATTGCGGCTGAAGGGGATCAGGGTCGTTTGGCTGTTGGAAATGGTGCCTTAGCATTTGACATGGACTATGCTCACTGGGTGGATGAACACCAACGTCTGCTCAATGATCTAAGATTGGCTATAAATTCTCAAATGAGTGATGATGAGTTACATATCCTTGTTGAAGGTGTCATGGAACATTATAATGACTTATTTAGGTTAAAGAGAATAGGAGCAAAGGCTGATATATTTCACATACTTTATGGAATGTGGAAAAGTCCAGTAGAAAGACGTTTTATGTGGCTTGGTGGATTCCGTTCATCTGAACTACTCAAGATCATCATGAACCACCTTGAGCCATTGACAGAGCAACAGTTGTTCGGCATTTGTACTTTGCAAAAATCTTCTCTCCAGTCTGAGGATGCTTTAAATCAAGGCATGGAAGCATTGCAGCAATATCTTGTAGAAACACTTTCCTCCACCTCCCTAGGACCCACTGGTTGTGGAAATGTTGCTGATTACATGGGCCAAATGGCTCTTGCAATGGGCAAGCTTGGTGAACTGGAGGGTCTCCTTCATCAGGCTGATCTCTTGAAGCAACATACTCTTCAACGGTTGCAACAAATTTTGACGACACGACAAACTGCCCGAGCACTCCTTGTCCAAAATGATTTCATTTCAAGACTAAGAGCACTTAGTTCATTATGGTTGGCACGCCCTAGAGAATAG 1389 0.4406 MKNMQGFKTAQPSSQLYCHSSFLLRGNDANRNPTTGLCDLGDLHHSSAVFHQEDGVDLGSSSMYSVKSNNVVGGSNMQYGTLSTNVGSSEIGSSGGGCMDTGLQLMYHKGVVMPTLPLGNGHVDNWADSGIADNSQHTDDTSTDIDTDDRIQCNRVKNGSRMVMHSKDKTKVKPEDQKTLRRLAQNREAAKKSRLRKKAYVQQLENSRVKLVQLEQELQQARQQGICIAAEGDQGRLAVGNGALAFDMDYAHWVDEHQRLLNDLRLAINSQMSDDELHILVEGVMEHYNDLFRLKRIGAKADIFHILYGMWKSPVERRFMWLGGFRSSELLKIIMNHLEPLTEQQLFGICTLQKSSLQSEDALNQGMEALQQYLVETLSSTSLGPTGCGNVADYMGQMALAMGKLGELEGLLHQADLLKQHTLQRLQQILTTRQTARALLVQNDFISRLRALSSLWLARPRE* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0296 462 Pfam Seed dormancy control 261 335 IPR025422 GO:0006351|GO:0043565
Pvu3g0296 462 Gene3D - 177 227 - -
Pvu3g0296 462 SMART brlzneu 174 243 IPR004827 GO:0003700|GO:0006355
Pvu3g0296 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Pvu3g0296 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700|GO:0006355
Pvu3g0296 462 SUPERFAMILY Leucine zipper domain 178 221 IPR046347 GO:0003700|GO:0006355
Pvu3g0296 462 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 41 462 - -
Pvu3g0296 462 Coils Coil 197 231 - -
Pvu3g0296 462 Pfam bZIP transcription factor 177 218 IPR004827 GO:0003700|GO:0006355
Pvu3g0296 462 PANTHER TRANSCRIPTION FACTOR TGA9 41 462 - -
Pvu3g0296 462 ProSiteProfiles DOG1 domain profile. 243 459 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0296 Pvu-Chr3 2731742 2736618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0296 7 462 bZIP Transcription Factor Family AT1G68640 52.340 3.81e-153 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu3g0296 DOG1 2.4e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0296 3 2731742 2736618 Pvu3g0296 3 2731742 2736618 ECH