Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0287 ATGCAAACTCACCCTTTCTCCTACATACCCTCCTGTCATGGTAGCAGTGCCTTCTTGGAACCTCATCATCATCAGGAGGCTGTGGATGAAGCCTCCATCTCCCTCTCTCTTGGCCCTCCTGGCCAACAACACCACCCCAAAGGCACTTCCTCCTCCTCCTCCTCCTCCACTCTGCACCATTATCGGCATAACCCTACCTCTGATGATCAGAGAGGTGTAACTGTGGCTCTTCACATTGGCCTTCCCAATCCCACCACTTCACCAAACAGTCCCACCCCCATTAGCAAGCCTGATCTTCATCTGACCTCCACTCCCATTCAGGGCCAGTACTGGATCCCTTCTCCGGCTCAAATCCTCATTGGACCCACCCAGTTCTCCTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACACGGTTCACAATATAGGAAAGGACCTGAATCACTGAGAGGAGCAAAACCAGCTTCTTCAATGCTGAGGCTTCCCTGCTATTGTTGTGCTGAGGGTTGCAAAAACAACATAGACCATCCAAGGTCTAGGCCACTGAAGGATTTCAGAACCCTTCAGACTCACTACAAGAGGAAGCATGGAGCAAAGCCTTTTGGGTGCAGAAAGTGTGGCAAGCCTTTTGCTGTGAGAGGGGATTGGAGGACACACGAGAAAAACTGTGGGAAGCTTTGGTTCTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCCCTCAAAGACCATGTTCGTGCCTTTGGTGATGGCCACGCTCCACACACTGTGGAGAGTTGTGATCAGATTGGGGAGGATGACTTGTTTGGTGATGAAGATGAAGAGGAACTAGATGTAGAAGATGATGATGATGATGATGAAGGTTATAACAGTAATCAAGTGGTTTTTTCTTTTAATTAA 927 0.4887 MQTHPFSYIPSCHGSSAFLEPHHHQEAVDEASISLSLGPPGQQHHPKGTSSSSSSSTLHHYRHNPTSDDQRGVTVALHIGLPNPTTSPNSPTPISKPDLHLTSTPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQIGEDDLFGDEDEEELDVEDDDDDDEGYNSNQVVFSFN* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0287 308 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Pvu3g0287 308 PANTHER ZINC FINGER PROTEIN WIP2 4 296 IPR043584 GO:0003700|GO:0010468
Pvu3g0287 308 SUPERFAMILY beta-beta-alpha zinc fingers 121 146 IPR036236 -
Pvu3g0287 308 MobiDBLite consensus disorder prediction 280 298 - -
Pvu3g0287 308 MobiDBLite consensus disorder prediction 35 70 - -
Pvu3g0287 308 Gene3D Classic Zinc Finger 167 257 - -
Pvu3g0287 308 PANTHER ZINC FINGER PROTEIN WIP6 4 296 - -
Pvu3g0287 308 MobiDBLite consensus disorder prediction 280 308 - -
Pvu3g0287 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Pvu3g0287 308 SUPERFAMILY beta-beta-alpha zinc fingers 193 230 IPR036236 -
Pvu3g0287 308 MobiDBLite consensus disorder prediction 36 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0287 Pvu-Chr3 2595394 2597227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0287 29 266 C2H2 Transcription Factor Family AT1G13290 72.803 1.46e-122 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu3g0287 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0287 3 2595394 2597227 Pvu3g0287 3 2595394 2597227 ECH