Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0276 ATGAAAAAGGAATTAGATGATCAAGGACAGAGTTCTTCTCAACCAATCAACAACAATAACAACAACATTCAAACCTACCAAGAGCACCTTCTTTTTCAAGAACAGATGCAGCAGCAGCAGCAGCAACAAAACACTGACATCTTCGGGGGTTCAAGAGGGTTAATGTTCCCTGAAATTACTATGCAACCATGGTCCATGCCTCCGGTTCACTCGTTCAACCCGGGTCCGGTTCACTACAACAACAACACCAACCCGGTCCGAGACCATCATGACCAAGCCTTCATAGTTCCTCCCACACCTTCACCCTATTCAAGCTTCTTCAGCAGAAGGGTCCCTTCTCTTCAATTTGCATACCCTTCTTCTGATCACCACCATCTAAGGATCATTTCTGACACCCTTGGACCCATGGTTCAACCCGGTTCAGCAGCACCCTTTGGACTCCAAGCCGAGCTAGGAAAAATGACTGCTCAAGAAATCATGGAGGCCAAGGCTCTTGCTGCATCAAAGAGTCACAGTGAAGCAGAAAGAAGACGTAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGTAGTTTACTTCCCAACACTACCAAAACAGATAAAGCTTCGCTGCTAGCGGAAGTGATTCAGCACGTGAAGGAGCTGAAGCGCCAAACCTCCCACATAGCGGAAACCAGTGCAGTGCCAACCGAGGCAGACGAGTTGACAGTAGATGCAGCTAACGAGGATGGAAAGTTTGTGATCAAAGCCTCAATGTGCTGTGAAGATAGGTCAGATCTCTTACCAGACCTCATCAAAACGTTGAAGGCCTTGAAGCTCAGAACCCTCAAGGCTGAGATAACCTCGGTTGGTGGGCGTGTGAAGAACGTGTTAGTCATTGCTGGAGACGAAGGAACTCCAAACACCAATGAAGAACAAAGCATGCAGCAACAGCAGCAGCAACGACAATATTGTATTACCTCAATACAAGAAACACTCAAGGCAGTGATGGAGAAGACTGCTGCTGGTGATGAATCAGCTTCTGCGAATGTTAAGCGCCAAAGGACTAACAACATCAATTTCCTTGAACAAAGATCTTTATAA 1083 0.4654 MKKELDDQGQSSSQPINNNNNNIQTYQEHLLFQEQMQQQQQQQNTDIFGGSRGLMFPEITMQPWSMPPVHSFNPGPVHYNNNTNPVRDHHDQAFIVPPTPSPYSSFFSRRVPSLQFAYPSSDHHHLRIISDTLGPMVQPGSAAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSHIAETSAVPTEADELTVDAANEDGKFVIKASMCCEDRSDLLPDLIKTLKALKLRTLKAEITSVGGRVKNVLVIAGDEGTPNTNEEQSMQQQQQQRQYCITSIQETLKAVMEKTAAGDESASANVKRQRTNNINFLEQRSL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0276 360 Pfam Helix-loop-helix DNA-binding domain 169 215 IPR011598 GO:0046983
Pvu3g0276 360 CDD bHLH_AtAIG1_like 161 239 - -
Pvu3g0276 360 Gene3D - 161 224 IPR036638 GO:0046983
Pvu3g0276 360 MobiDBLite consensus disorder prediction 1 21 - -
Pvu3g0276 360 SMART finulus 172 221 IPR011598 GO:0046983
Pvu3g0276 360 PANTHER TRANSCRIPTION FACTOR BHLH30 80 355 IPR045847 GO:0003700|GO:0006355
Pvu3g0276 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 222 IPR036638 GO:0046983
Pvu3g0276 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Pvu3g0276 360 CDD ACT_UUR-ACR-like 253 330 - -
Pvu3g0276 360 PANTHER TRANSCRIPTION FACTOR BHLH30 80 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0276 Pvu-Chr3 2422006 2426225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0276 21 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 53.406 8.23e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g0276 HLH 2.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0276 3 2422006 2426225 Pvu3g0276 3 2422006 2426225 ECH