Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3252 ATGAGAAACTCTCTGCAGTTTTTTTGGCCTCAGATCTTGTGTTTCATATTATTAACTTTTCAATATGAAGTTGAAACAAAATCCACCATTGAAGCATGCAATGCCTCAGACTCCTGCACCTCTCTCCTCTCTTATGTCTTGCCCTGGGACTCCAAAGTATCCCAAATCGCCACTCGTTTCCACGTAAACGTCTCTGATATCTTGGCCTCCAACTCTCTCTTCCCCATAACATCATCAAGTGCACACCAAATCCTCAGGGCCAAAACCTTGGTCAAAATACCCATCTTCTGCTCTTGTGTGGATGGCATCCGAAGGTCCATGTCAACCACTTACACTGTTCATGCAGCAGACACAGCTGCTTCCATATCAGAAGCTTATGGTGGGTTGGTTAGCATTGAACAGATCAACATTGCGAACAGCATCAATGGCACCAATCCCTTGACCAGTGGAGACACCCTTGTTATTCCACTGCCATGCACATGTTTTAACAACGTTAACAATGGGGAAACCGCTGTTTACATGTCGTATGTTGTGCAGAGAAGAGAGAGCCTGAGTAGCATAGCGTCAAAGTTTGGTACAACTTTTTCGGACTTGGAAACTGTAAATGGCTTTTGGGAAGCTACTGTAGATCCCGGAGACATTCTATCTGTTCCCATTGCAGCATGTTCCTCAGCAACCTTGAAATGGTACGATGAGAGTATGATAGTCCCAAATGGCTCATATACATTAACTGCGAGCAAGTGCATCAAATGCAGTTGCGAACCAATGGATATTACGATGCGATGTGTTCCTTCTGGACTAGATGTCCCCTGCTATAATTTACGTTGCAAACAATCCAATCTTATTATTGGCAATGAATGTGTGGAGCATTCACAAACAGCTTGCAATCTCATCCAATGTGTTTACCGTGGCCATAGGGGTGGAAAAATTCTGAGTAGTATGAAGAACTCGTCTTACCTCCAGTGCCCTGATAATCTGTGTCATAGTGGAGCATCATGTTGGGCTTTCTCATCATATCCTGAAGACCCGTTTGGTATGTCTCCAAAGTCATCTCCCTCCTTGCCACTGCCAGTTTCTAAAGCTTCTCTCAGTGCCTCCAATGGAAGGCTTGGTCAATTTTTAATCAATGTGCTGCAAATATTCTTATTTTTAAAGTTTATCCTTATTTTCTGA 1173 0.4331 MRNSLQFFWPQILCFILLTFQYEVETKSTIEACNASDSCTSLLSYVLPWDSKVSQIATRFHVNVSDILASNSLFPITSSSAHQILRAKTLVKIPIFCSCVDGIRRSMSTTYTVHAADTAASISEAYGGLVSIEQINIANSINGTNPLTSGDTLVIPLPCTCFNNVNNGETAVYMSYVVQRRESLSSIASKFGTTFSDLETVNGFWEATVDPGDILSVPIAACSSATLKWYDESMIVPNGSYTLTASKCIKCSCEPMDITMRCVPSGLDVPCYNLRCKQSNLIIGNECVEHSQTACNLIQCVYRGHRGGKILSSMKNSSYLQCPDNLCHSGASCWAFSSYPEDPFGMSPKSSPSLPLPVSKASLSASNGRLGQFLINVLQIFLFLKFILIF* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3252 390 SMART LysM_2 175 218 IPR018392 -
Pvu2g3252 390 SMART LysM_2 110 156 IPR018392 -
Pvu2g3252 390 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 12 335 - -
Pvu2g3252 390 ProSiteProfiles LysM domain profile. 109 155 IPR018392 -
Pvu2g3252 390 Gene3D LysM domain 165 226 IPR036779 -
Pvu2g3252 390 CDD LysM 175 217 IPR018392 -
Pvu2g3252 390 Pfam LysM domain 176 218 IPR018392 -
Pvu2g3252 390 Pfam LysM domain 111 156 IPR018392 -
Pvu2g3252 390 SUPERFAMILY LysM domain 174 218 IPR036779 -
Pvu2g3252 390 CDD LysM 109 155 IPR018392 -
Pvu2g3252 390 Gene3D LysM domain 105 164 IPR036779 -
Pvu2g3252 390 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 335 - -
Pvu2g3252 390 ProSiteProfiles LysM domain profile. 174 217 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3252 Pvu-Chr2 47668502 47672480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3252 10 323 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 43.533 7.07e-83 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3252 - - vra:106767878 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3252 2 47668502 47672480 Pvu2g3252 2 47668502 47672480 ECH