Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3160 ATGGAGAACACCTGGATCCTCACTTTCCACCTTCTTCTCCTCCTGCTCCATTCAAATGCAGCAAAAGGGGCCATTAGTGTGGGTGTGGGTGTTGGTGGAAGAGGTGGCATAGGTGTTGGCATTGGTATTGGCAATGGGGGAAGTGGTGGTAGCACCCCAGGACCCTCTGGATCCTCAGTGCCAAACCTCAACAATGCTTTCACGGCCCTCCAGGCTTGGAAATCTGCTATCACTGATGACCCTTTGAAGATTTTGGACACTTGGGTTGGTCCCAATGTGTGTTCCTACAAAGGTGTCTTCTGCTCGAATTCTCAGGACGACAATGGAATTGCCACAACAGCATCAACCGAGTCTTCTGTTGTTGCTGGAATAGATCTCAACCATGCAAATCTCAAAGGGACTCTTGTCAAAGAGCTCTCTTTGCTATCAGATATCACTCTTTTCCATCTCAACACCAACAGGCTTTCTGGCTCAGTTCCTGACTCATTCAGAGACCTCACTTCCCTCCAAGAGTTGGACCTCAGCAACAACCAACTCTCAGGACCTTTTCCCACTGCCACTCTCTCCATGCCAAGCCTCGTCTACTTGGACCTCAGATACAACAACTTCTCAGGGCAACTTCCTGATGAACTCTTCAACAAGAGACTCGATGCAATATTCCTCAACAACAACAATTTTGGAGGTGAAATCCCAGAGAATCTGGGAAATTCACCTGCCTCAGTCATCAACTTGGCCAACAACAAGTTGAGTGGAAACATCCCTTTTAGCTTTGGCTTCATGAGTTCAAGACTAAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCTCAAGGAGTTGGGATCTTCACACAGATGCAAGTGTTGGATGTGAGTTTCAACTCTCTGATGGGCCATTTGCCTGACACAATGAATTGCTTGCAGGATATAGAGGTTCTCAATTTGGCCAATAACAAGCTCTCAGGGGAATTATCTGATGTGGTGTGCTCCTTGAGAAGCCTATTAAATCTAACTGTTGCTCACAATTTCTTCTCTGGGCTGAGCCAGGAATGTTCAAGGCTATTCAATGTGGGGTTTGATTTCTCGGATAACTGTATCCCTGGAAGGAACATGCAAAGACCACAACCAGAGTGTTCTGGGATCCCTGGTGGCAGTCTCAATTGTCTTAGAATCCCTGCTCCAAAGCCTCTTGTTTGTGCAACTCTGGCTGCAACTTTGTCTAACCACGCAAATTCACATTCCTCTTCTCCCTGA 1260 0.4667 MENTWILTFHLLLLLLHSNAAKGAISVGVGVGGRGGIGVGIGIGNGGSGGSTPGPSGSSVPNLNNAFTALQAWKSAITDDPLKILDTWVGPNVCSYKGVFCSNSQDDNGIATTASTESSVVAGIDLNHANLKGTLVKELSLLSDITLFHLNTNRLSGSVPDSFRDLTSLQELDLSNNQLSGPFPTATLSMPSLVYLDLRYNNFSGQLPDELFNKRLDAIFLNNNNFGGEIPENLGNSPASVINLANNKLSGNIPFSFGFMSSRLKEILFLNNQLTGCIPQGVGIFTQMQVLDVSFNSLMGHLPDTMNCLQDIEVLNLANNKLSGELSDVVCSLRSLLNLTVAHNFFSGLSQECSRLFNVGFDFSDNCIPGRNMQRPQPECSGIPGGSLNCLRIPAPKPLVCATLAATLSNHANSHSSSP* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3160 419 Pfam Leucine rich repeat N-terminal domain 64 102 IPR013210 -
Pvu2g3160 419 PRINTS Leucine-rich repeat signature 169 182 - -
Pvu2g3160 419 PRINTS Leucine-rich repeat signature 309 322 - -
Pvu2g3160 419 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 419 - -
Pvu2g3160 419 SUPERFAMILY L domain-like 67 358 - -
Pvu2g3160 419 Gene3D Ribonuclease Inhibitor 64 238 IPR032675 -
Pvu2g3160 419 ProSiteProfiles Leucine-rich repeat profile. 168 189 IPR001611 GO:0005515
Pvu2g3160 419 SMART LRR_typ_2 190 214 IPR003591 -
Pvu2g3160 419 SMART LRR_typ_2 142 165 IPR003591 -
Pvu2g3160 419 SMART LRR_typ_2 166 189 IPR003591 -
Pvu2g3160 419 SMART LRR_typ_2 333 356 IPR003591 -
Pvu2g3160 419 SMART LRR_typ_2 285 309 IPR003591 -
Pvu2g3160 419 Gene3D Ribonuclease Inhibitor 239 375 IPR032675 -
Pvu2g3160 419 Pfam Leucine rich repeat 148 203 IPR001611 GO:0005515
Pvu2g3160 419 PANTHER LRR/EXTENSIN 1 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3160 Pvu-Chr2 46946102 46948168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3160 61 392 Leucine-rich Repeat extension Gene Families AT3G24480 48.817 1.48e-102 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3160 - - gmx:100786358 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3160 2 46946102 46948168 Pvu2g3160 2 46946102 46948168 ECH