Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2454 ATGGCCCAAGTAGAGAGTGGGCAAGCCAGTGAAGGGATTAAGCTGTTTGGAACAACGATTACCTTGCATGGTAGAGAAAGAAGAGAAGATAATAAAGTGAGTGAAGATGAGACAGAAAAGAGAGCAGAGAGGATCATACCGTGTCCAAGATGCAAGAGCATGGAAACCAAGTTTTGCTACTTCAACAACTACAACGTTAATCAGCCTAGGCATTTCTGCAAGGGCTGCCAGAGGTACTGGACTGCCGGCGGAGCCCTTCGCAACGTACCAATAGGGGCAGGCCGCCGAAAGGCCAAACCGCCGTCCCATGACCCTACAGCTTTTCTGGACGCATCCACGGTTCAACAACAATTTGCTTTGGAAGAATGGGATGTTGCCACCATCACTCACGGCGATTTCCGGCACTTTTTTCCGTCGAAAAGGCGGAGGATAAACTCAGCTGAGCATGAAAGTCAAAACGAGTTTGTTATGAGCCACGAAATCATAGAACATCCGAATGAGATAGAAACGAAGGAGGCTTTAAAAGGCAGTGACAATGTAAAGCTTATCTGA 552 0.4746 MAQVESGQASEGIKLFGTTITLHGRERREDNKVSEDETEKRAERIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKAKPPSHDPTAFLDASTVQQQFALEEWDVATITHGDFRHFFPSKRRRINSAEHESQNEFVMSHEIIEHPNEIETKEALKGSDNVKLI* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2454 183 Pfam Dof domain, zinc finger 45 99 IPR003851 GO:0003677|GO:0006355
Pvu2g2454 183 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Pvu2g2454 183 PANTHER CYCLIC DOF FACTOR 2 5 148 IPR045174 GO:0003700|GO:0006355
Pvu2g2454 183 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 5 148 - -
Pvu2g2454 183 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2454 Pvu-Chr2 40406454 40408578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2454 8 143 C2C2-Dof Transcription Factor Family AT1G29160 55.488 6.63e-55 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu2g2454 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2454 - - pvu:PHAVU_002G238400g 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2454 2 40406454 40408578 Pvu2g2454 2 40406454 40408578 ECH