Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2372 ATGGTAGTAGTCACCCCTCCAACAGCGTCTAACAAATGGACACAGTTATCTTCTCTTGCATCTCAGATAGATGATCGCAAGGCCTCTATGGGAAGAGTCATGGAAAAACCAACCCAAGATCTTCTTCAGCAGCAGCAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCACAGCCTAGGCACTTCTGCAAAGCCTGCAAGCGATACTGGACCAGAGGTGGAACTCTCAGAAACGTTCCCGTTGGTGGTGGTTGCAGAAAAAACAAGCGTGTCAAACGTCCAAACGGTGACGCTTCTGCTAACTCCCCCCCTTCTTCCTCCACTCCTAGCTCCAATTCAAACCCTCCTTCACGGCCCCACATCCCTTCTAGTTCAACCGCAAACCATGTCAATGTAAACCCTTTGTTTTATGGGCTACCCAATAGTAACGGTTGTGATGTCATGGATGTTCCTTTCCCAAGGTTTAATCTTCAGTCTCAGCTGAATGCCCTTGGGTTAGGTTTTTCGTCCGGGGTTAACGTTATCTCAAGTGAACCTAGTGATAATGGGTTTAGTACTACTACTACTACTTCAAATACTAACAACTTTCTTTCGGCTTATAATTCCATATTTGGTTCTTCTTCCTCCTCAACTTGTGCACCCTCAACTCCTGTTATGGCTTCCTTGCTGAGTTCTACTCTCCTGCAGCAGAAGTTTATCGGTGGTGCTGGGGTGAAGGGTCATCATGATGGCAATGGTTTCCAGGGTTTTGCACCGCTTCAAGGGTTGCAAATGGAAGGTAGTAATAATATTAGCTCAAAAGAAGTGAAAGCTGAAGGACCAAACAGGTTGGAGTTGGAGTGGAGTAATAATAACAATAACAATGGTGGTGGTGGTGCTTGTCAAAACCAGATGGAGCATGTGGGCTTGTCTGATCCTAATTCACTTTATTGGAACACTGCAACAGGTTTGAGTGCTTGGAGTGATCAACCTAACTTTGGTCCTTCAGTCACGTCTCTGATCTAG 1044 0.4588 MVVVTPPTASNKWTQLSSLASQIDDRKASMGRVMEKPTQDLLQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNGDASANSPPSSSTPSSNSNPPSRPHIPSSSTANHVNVNPLFYGLPNSNGCDVMDVPFPRFNLQSQLNALGLGFSSGVNVISSEPSDNGFSTTTTTSNTNNFLSAYNSIFGSSSSSTCAPSTPVMASLLSSTLLQQKFIGGAGVKGHHDGNGFQGFAPLQGLQMEGSNNISSKEVKAEGPNRLELEWSNNNNNNGGGGACQNQMEHVGLSDPNSLYWNTATGLSAWSDQPNFGPSVTSLI* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2372 347 MobiDBLite consensus disorder prediction 93 139 - -
Pvu2g2372 347 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 9 333 - -
Pvu2g2372 347 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Pvu2g2372 347 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Pvu2g2372 347 Pfam Dof domain, zinc finger 47 103 IPR003851 GO:0003677|GO:0006355
Pvu2g2372 347 MobiDBLite consensus disorder prediction 111 139 - -
Pvu2g2372 347 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 333 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2372 Pvu-Chr2 39587482 39589579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2372 49 152 C2C2-Dof Transcription Factor Family AT1G28310 69.524 9.48e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu2g2372 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2372 - - var:108331965 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2372 2 39587482 39589579 Pvu2g2372 2 39587482 39589579 ECH
Pvu2g2372 2 39587482 39589579 Pvu6g1909 6 29308624 29310821 PCT