Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g2371 ATGGAACAAGAAGAAGGGAGAGAGGAAAATACAAAAATTCAGCTTGCAGTTGCAGCACCAAAACCGCAGCACAAATGTCCTCGCTGCGATTCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGTCTCTCACAGCCTCGTCACTTCTGCAAAACGTGTAAAAGGTACTGGACGCATGGCGGAACCTTCAGGAACATACCTGTTGGTGGTGCTTCCCGTAAAGCCAAACGTGGCAAAACAGATTCTTCTTCACCTTCCCATTCACTCACACAACCACTGTCAAATTTGATGAAGCCTTCACCACTCACTATGCTTCACTCCACTAGCCCTTACTATCATCAACTTGGTGGTGGTGGTGGTGGTGGAAGAGGGTATTTGTCATCTCTTGCAACGCTTCATTCTCAGAGCCTCAATGTTGCGGGTTCTCCTTCTAGTTTGCCTCTTCTCTCTGGCTTCAACGCTGCTTCTTCTTTTCCTCTGCGGTTCCATCACATGGGAACCAGAGAGAGGGTGGAATCTCTCTATCCTGCACCACAGCGTTTGCTTGCATCAAACATGGCTAGTGGCACTGCTGCTTCTCCCTCTGCTCATTGCCCACAAAGCTTGATTAATAATGTTTCAAGTACAAACCTTACGGCTGGTTCTGATGCCTCTTTGTGGAGTGCTACTATCAACGCCACTTCCATCGGTGGAAACTCTGATCAGAACAATGTCAAAGGTGGTCCTTCCTCTTTGATCCCAAATCATTGGCTTCATCTCTCAGGGTATCGTCCTCCTCAATAA 786 0.4746 MEQEEGREENTKIQLAVAAPKPQHKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCKRYWTHGGTFRNIPVGGASRKAKRGKTDSSSPSHSLTQPLSNLMKPSPLTMLHSTSPYYHQLGGGGGGGRGYLSSLATLHSQSLNVAGSPSSLPLLSGFNAASSFPLRFHHMGTRERVESLYPAPQRLLASNMASGTAASPSAHCPQSLINNVSSTNLTAGSDASLWSATINATSIGGNSDQNNVKGGPSSLIPNHWLHLSGYRPPQ* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g2371 261 MobiDBLite consensus disorder prediction 68 100 - -
Pvu2g2371 261 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 261 IPR045174 GO:0003700|GO:0006355
Pvu2g2371 261 Pfam Dof domain, zinc finger 23 78 IPR003851 GO:0003677|GO:0006355
Pvu2g2371 261 MobiDBLite consensus disorder prediction 83 100 - -
Pvu2g2371 261 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 16 261 - -
Pvu2g2371 261 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Pvu2g2371 261 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g2371 Pvu-Chr2 39579558 39580512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g2371 16 110 C2C2-Dof Transcription Factor Family AT5G66940 54.545 3.07e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu2g2371 zf-Dof 9.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g2371 - - gmx:100814555 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g2371 2 39579558 39580512 Pvu2g2371 2 39579558 39580512 ECH
Pvu2g2371 2 39579558 39580512 Pvu6g1910 6 29322500 29324409 PCT