Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1941 ATGGGCGCGGGGAAAGGGGCTGTTTGGATGGTCAAAGTTATAGCGGTGGTAGCAATCGCGGTGGTGGCGACTGTAGAGGCCCAACCGGAGGCCAAATTCGTGTGCAACAGCGCGAATAACTCCGCCTGTGGCGCCCTGATTGGGTACTCTCACGTGAACGGCACCACCCTGGGCGACATCCAAACCCTCTTCAACGTGAAGAAACTTGTGGACATCCTAGGCGCGAACAACCTCCCAAGCAACACCACAAAGCGCCACGAGGTGGGGCCCAGCGAGGTTGTGAAGGTGCCGTTGCCGTGCAGGTGCCTCAACGGGACGGGACTCTCGGACCGGGTTCCGCTTTATAAGATAAAAAAGGACGACACGCTGTACAACATAGCGACGACGACGTTTGGGGGTCTTGTGAAGTATCCGCAGATCACGGCGGCGAATAATATACCGGACGAGAATAATATCACCGCCGGGGCCACGATTTATATTCCGCTGCCGTGTAGCTGCGACGAGGTGGATGGGAGCAGAGTGGTGCACTATGCGCACCTGGTGGCGGCACAGAGCACGGTGGAGGGTATTGCTGAACAATTTGGCACCAGTCAGCAGATCCTCCTCACACTCAATGGCATTTCCGACCCCAAAACGCTTCAGGCCGGTCAGATTCTTGATGTTCCTCTTCAAGCTTGTTCCTCGAGTGTGAAAAATGAATCATTGGATTATCCATTGCTTGTTGCAAATTCTTCTTACGCCTATACTGCCAACGAATGCGTCAAATGCAAGTGTGACTCCAGCAACAACTACATATTACAATGCGAGCAATCCGAACTCAAACCTACCAACTGGTCTATTTGTCCTTCTGCGCAATGCTCAAGCAACGTCTTCATTGGCAACATCACTTCCCATACAGATCCCTGCAATCGCACAATCTGTGCCTATACTGGTTATACATTCCGCAATATCTCAGCAGAACTTGTAACGCAGAACACTTGTGCAGTGCCACCGAGTCCTTCAGGAGGATCTAGTGGTTCTGGTTCAGGAGCGCCCAGGAGCACTGTGCAAGGCTTGCTTTGGAGTAATCTTTTCATTGCTATTCACTTGGTCCTCTTTCTTGTCTATGTTTTTTAG 1116 0.5179 MGAGKGAVWMVKVIAVVAIAVVATVEAQPEAKFVCNSANNSACGALIGYSHVNGTTLGDIQTLFNVKKLVDILGANNLPSNTTKRHEVGPSEVVKVPLPCRCLNGTGLSDRVPLYKIKKDDTLYNIATTTFGGLVKYPQITAANNIPDENNITAGATIYIPLPCSCDEVDGSRVVHYAHLVAAQSTVEGIAEQFGTSQQILLTLNGISDPKTLQAGQILDVPLQACSSSVKNESLDYPLLVANSSYAYTANECVKCKCDSSNNYILQCEQSELKPTNWSICPSAQCSSNVFIGNITSHTDPCNRTICAYTGYTFRNISAELVTQNTCAVPPSPSGGSSGSGSGAPRSTVQGLLWSNLFIAIHLVLFLVYVF* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1941 371 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
Pvu2g1941 371 Pfam LysM domain 115 161 IPR018392 -
Pvu2g1941 371 Pfam LysM domain 186 222 IPR018392 -
Pvu2g1941 371 SUPERFAMILY LysM domain 114 162 IPR036779 -
Pvu2g1941 371 PANTHER BNAC03G47500D PROTEIN 15 349 - -
Pvu2g1941 371 ProSiteProfiles LysM domain profile. 177 221 IPR018392 -
Pvu2g1941 371 CDD LysM 115 160 IPR018392 -
Pvu2g1941 371 Gene3D LysM domain 169 234 IPR036779 -
Pvu2g1941 371 Gene3D LysM domain 114 168 IPR036779 -
Pvu2g1941 371 SMART LysM_2 114 161 IPR018392 -
Pvu2g1941 371 SMART LysM_2 178 222 IPR018392 -
Pvu2g1941 371 CDD LysM 179 221 IPR018392 -
Pvu2g1941 371 SUPERFAMILY LysM domain 177 222 IPR036779 -
Pvu2g1941 371 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1941 Pvu-Chr2 34408747 34412176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1941 16 317 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 49.342 1.30e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1941 - - gmx:100804190 540.036