Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1772 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTTACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCACCTGAGGCTAATGTGTCTACACGGGAAGCCTTGGTAATGGAGTTAAGCAGTCAACAGGAGTATTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCTCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTTAGCAGCAAAGAGCTCGAATCTCTCGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGG 438 0.4635 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALVMELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTR 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1772 146 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu2g1772 146 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu2g1772 146 Pfam K-box region 93 145 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu2g1772 146 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pvu2g1772 146 Coils Coil 128 146 - -
Pvu2g1772 146 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pvu2g1772 146 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 146 - -
Pvu2g1772 146 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu2g1772 146 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 146 - -
Pvu2g1772 146 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu2g1772 146 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu2g1772 146 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu2g1772 146 ProSiteProfiles K-box domain profile. 91 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu2g1772 146 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu2g1772 146 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1772 Pvu-Chr2 32030021 32036233 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu2g1772 K-box 4.5e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1772 2 32030021 32036233 Pvu2g1772 2 32030021 32036233 ECH
Pvu2g1772 2 32030021 32036233 Pvu8g0284 8 2299894 2307811 ECH
Pvu2g1772 2 32030021 32036233 Pvu1g2718 1 51735651 51740810 PCT