Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1755 ATGTCAGAGGTTAAAGGCTCTGAGATAAAGCTCTTTGGAAGGACAATCTCCCTGCCACACAATGATTCTTCTTCACCTGCATGTCTCTCTTGTCCTTCATCTTCCTCTTCTCCCCAGCAAGCTACCTCTGCAACACAACAACGTCAAGAAGACCAGGAACCAATAAGGAAAGAACTTACATCACTTCAAGACGATGATGCGTCATCACATCAAACCACAGAGGATTTAAAATCTCCCGCTTCAGGCATACTCGATAATCCTAAGACTCCCTCAGCCGAAACAGAGACATCACTGCAGAAATCTTCTGCAAACGGAGAACAGAGCGAGACTACAAGTGCTTCTGAAGATAAAACACCAAAGAAACCTGACAAGATACTTCCATGTCCGCGGTGCAATAGCATGGACACCAAATTCTGCTATTACAACAACTACAACGTCAACCAGCCTCGTCATTTCTGCAAGAACTGTCAAAGATACTGGACTGCAGGAGGAACAATGAGGAATGTGCCGGTGGGTGCTGGTCGCAGAAAAAACAAGAACATTTCGGCTGCAGCTGCATCACATTACCGACAGATAATGATCCCGGAGGCACTTCAAGGAGCTACACTCAATGCCTCCAATGGACTGCATAATGCCCTTTTGAGGAATAGAGCTGGTGTGTTGACTTTTGGTCCTGATACCCCTCTCTGTGATACCATGAGTTCTGTGTTGAGCATTGCTGAGCGAGCCCAAAGTTGTGTATCTAATGGGTTTCATGGAACTGAGCCAAATAGTTGTGTTTCCTATAGTAAGGAGGGTGGTCATTCTAATGGAGTTTCTGTTTCAACAACTTCAGCTTCCAGCCATACAAGCTCACATGAATCAGTTGATGAAAGAGTTGAAGGTTTCAGTCCTCAATTATCATACTTCCCAGGTGCCCCTTGGCCTTATCCTATGCCTCGTCATACAGTTTGCCCACCTAGCTACCCTCTATCATTCTATACTACACCAGCATATTGGGGTTGTATGCCACCCTCTTGGAATATGCCATGTATGTCACCCCAATCTTCTGTTACCAACCCTGTCTCTGCCCCCATTTTAGGGAAACACTCAAGGAATGGGAACATCATTACCCCATCCAATTCACAGAAAGAAATGCGTGGTGTAGAACATAGCACTTCAGAACACAATTTCTTGATTCCCAAGACTCTTAGAATTGATGACCCTGGTGAAACAGCAAGGAGTTCGATGTGGTCAAAACTAGGAACCAAGAATGACAGGGCCAGCTCTGGAGGCCTTTTCCAAGCTTTTCCACCCAAGGGAAATGACATGAATCGCATGGTTGAAGCATCACCCGAGTTGCAAGCCAACCCTGCAGCTCTATCGCGCTCTCTTACCTTCCATGAACAGACCTGA 1395 0.4588 MSEVKGSEIKLFGRTISLPHNDSSSPACLSCPSSSSSPQQATSATQQRQEDQEPIRKELTSLQDDDASSHQTTEDLKSPASGILDNPKTPSAETETSLQKSSANGEQSETTSASEDKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNISAAAASHYRQIMIPEALQGATLNASNGLHNALLRNRAGVLTFGPDTPLCDTMSSVLSIAERAQSCVSNGFHGTEPNSCVSYSKEGGHSNGVSVSTTSASSHTSSHESVDERVEGFSPQLSYFPGAPWPYPMPRHTVCPPSYPLSFYTTPAYWGCMPPSWNMPCMSPQSSVTNPVSAPILGKHSRNGNIITPSNSQKEMRGVEHSTSEHNFLIPKTLRIDDPGETARSSMWSKLGTKNDRASSGGLFQAFPPKGNDMNRMVEASPELQANPAALSRSLTFHEQT* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1755 464 Pfam Dof domain, zinc finger 123 180 IPR003851 GO:0003677|GO:0006355
Pvu2g1755 464 ProSiteProfiles Zinc finger Dof-type profile. 126 180 IPR003851 GO:0003677|GO:0006355
Pvu2g1755 464 MobiDBLite consensus disorder prediction 73 112 - -
Pvu2g1755 464 MobiDBLite consensus disorder prediction 264 287 - -
Pvu2g1755 464 MobiDBLite consensus disorder prediction 264 284 - -
Pvu2g1755 464 MobiDBLite consensus disorder prediction 50 72 - -
Pvu2g1755 464 ProSitePatterns Zinc finger Dof-type signature. 128 164 IPR003851 GO:0003677|GO:0006355
Pvu2g1755 464 MobiDBLite consensus disorder prediction 15 127 - -
Pvu2g1755 464 MobiDBLite consensus disorder prediction 17 49 - -
Pvu2g1755 464 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 464 - -
Pvu2g1755 464 PANTHER CYCLIC DOF FACTOR 2 1 464 IPR045174 GO:0003700|GO:0006355
Pvu2g1755 464 MobiDBLite consensus disorder prediction 415 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1755 Pvu-Chr2 31594717 31597909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g1755 9 462 C2C2-Dof Transcription Factor Family AT5G39660 40.524 1.43e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu2g1755 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g1755 - - gmx:100813315 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1755 2 31594717 31597909 Pvu2g1755 2 31594717 31597909 ECH
Pvu2g1755 2 31594717 31597909 Pvu3g1956 3 40146058 40147729 ECH
Pvu2g1755 2 31594717 31597909 Pvu9g1928 9 27607268 27610475 ECH