Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1715 ATGGCGGGTATTTTCTCACTAGGAGGTAGAGGAAACAACAACGAAGAGGAGATTCCTCCCCCTCCCGATACCCTATACTGGTATAACAACAAGAATGACGACGTTTCTTCTTACCACCACCACCGAGGAGGCGGTGGCTTTGAGCTATGGAACCAACAGCAGCAGCAACACTTTATGGACCAGGGTCCTCCACAACCACGACCCCTCTTTCACCAAGATCTATACTCCGCCTTGGGTGTTGGTGTTGGACCCAGCAGGCCTATCTCCGATGATCAGTCTTCATCGAGATCCGGCTTCATGGTGGGAGGAGGAAGCGGGAGTGGAAGCGGTGGGATTAGCTGTCAAGATTGTGGAAACCAAGCTAAAAAAGATTGCCCTCACATGCGGTGCAGAACATGCTGCAAGAGCCGGGGCTTCGATTGCCAAACCCATGTCAAGAGCACATGGGTACCGGCTTCACGCCGTCGCGAGAGACAGCAACAACTCTCCACGTTACAACAAAACATTGAAAGTTCTGGAGAGCTTCCGAAAAGGCAGAGAGAGAGGGATCATAATAACCCCACCTCCTCTTCTCTCGCCTGCACTCGCTTGCCTTCCAATCCCTCCTCCTCAGGGTTAGAGGAGGTTAATTTCCCGGCGGTGGTGAGATCTTCTGCGGAGTTCAGGTGCGTACGTGTGAGCTCGATGGACGAGGCGGATGAGGAGTATGCATACTCAACTGCTGTGAACATTGGAGGGCATGTGTTCAAAGGGATTTTATATGACTATGGTCCAGAAGGTAACCGTAATTACATGGGTGGTAATGGGGAAAGCTCTTCCACTGGGGTTGGAGGTTTGAACCTCACTACTGGTGCTGTTGTCTCAGAGCCACTCCTTGATCCTTCTTCTTCCTTGTATCCAGCTCCTCTTAACACCTTCATGCCCGGTAGCGGTACGCAATTCTTCCCTCACCCACGATCTTGA 963 0.5171 MAGIFSLGGRGNNNEEEIPPPPDTLYWYNNKNDDVSSYHHHRGGGGFELWNQQQQQHFMDQGPPQPRPLFHQDLYSALGVGVGPSRPISDDQSSSRSGFMVGGGSGSGSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLSTLQQNIESSGELPKRQRERDHNNPTSSSLACTRLPSNPSSSGLEEVNFPAVVRSSAEFRCVRVSSMDEADEEYAYSTAVNIGGHVFKGILYDYGPEGNRNYMGGNGESSSTGVGGLNLTTGAVVSEPLLDPSSSLYPAPLNTFMPGSGTQFFPHPRS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1715 320 MobiDBLite consensus disorder prediction 81 105 - -
Pvu2g1715 320 MobiDBLite consensus disorder prediction 1 24 - -
Pvu2g1715 320 MobiDBLite consensus disorder prediction 87 105 - -
Pvu2g1715 320 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 211 258 IPR006511 -
Pvu2g1715 320 MobiDBLite consensus disorder prediction 164 207 - -
Pvu2g1715 320 Pfam Domain of unknown function (DUF702) 111 259 - -
Pvu2g1715 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 320 IPR007818 GO:0003700|GO:0006355
Pvu2g1715 320 MobiDBLite consensus disorder prediction 186 207 - -
Pvu2g1715 320 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 320 - -
Pvu2g1715 320 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 113 155 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1715 Pvu-Chr2 30900109 30902938 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pvu2g1715 DUF702 1.8e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g0139 9 2162528 2164509 Pvu2g1715 2 30900109 30902938 ECH
Pvu11g0423 11 3574481 3575740 Pvu2g1715 2 30900109 30902938 ECH
Pvu2g1715 2 30900109 30902938 Pvu2g1715 2 30900109 30902938 ECH
Pvu9g0045 9 826504 827586 Pvu2g1715 2 30900109 30902938 ECH