Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1150 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGATGAGGCTGCACTTTGTCGTGCCTGCGATGAGAAGGTTCACATGTGCAATAAGCTTGCTAGTAGACATGTGAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGACAAATCTAGTCATGCTGAAAATCCGGGTTCACAACCATTGGAACCTGGTGAGAGTAAAAGAGGACAAAATCCACTTCCCAAACTAAAAATGGGAGAGAAGCAGCAAAATCATGGGATGCCTCTGCTTCCAACACCAGGACCTGATGCTGATGGGCATACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAACAGATTGCATGAACAGGCATCAAATAATCAGCCATAA 555 0.445 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPGSQPLEPGESKRGQNPLPKLKMGEKQQNHGMPLLPTPGPDADGHTKMETKMIDLNMKPNRLHEQASNNQP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1150 184 CDD Bbox1_BBX-like 4 47 - -
Pvu2g1150 184 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Pvu2g1150 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Pvu2g1150 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Pvu2g1150 184 MobiDBLite consensus disorder prediction 157 171 - -
Pvu2g1150 184 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Pvu2g1150 184 Gene3D Classic Zinc Finger 2 91 - -
Pvu2g1150 184 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Pvu2g1150 184 CDD Bbox1_BBX-like 56 96 - -
Pvu2g1150 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pvu2g1150 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Pvu2g1150 184 MobiDBLite consensus disorder prediction 105 184 - -
Pvu2g1150 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Pvu2g1150 184 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1150 Pvu-Chr2 22653997 22656628 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pvu2g1150 zf-B_box 2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2678 3 48801087 48803925 Pvu2g1150 2 22653997 22656628 ECH
Pvu2g1150 2 22653997 22656628 Pvu2g1150 2 22653997 22656628 ECH
Pvu9g0044 9 811932 813556 Pvu2g1150 2 22653997 22656628 ECH
Pvu11g0419 11 3531452 3533541 Pvu2g1150 2 22653997 22656628 ECH
Pvu2g1150 2 22653997 22656628 Pvu3g2678 3 48801087 48803925 PCT