Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1033 ATGGAAAGAGGCAGAGACAGTTATGGTGACCGTGGCAGTGGCAGTTATGGTGGCGCTGACGGCAATGCTGGCCGCTACAATTCCCGTGACCGATACGGCAGTGCTGGTCGTAGCAGTTACGGTGGAGGTGACAGTTACAGTGGCCGTAGAGGAAGGTTTTACCAACGTCCTCAGCTAAGTAGTGGCAATGAACAAAGCTCTACTTCCCAACCACAACCACAAGCCCGGTGGCAACCGAAGGTAAACCCTTCTTCCGCTGGTGAATCTTCAGAACCTCACGGTTCTCAACCTCAAACTGAAACTGAAACTGAAAAACAGACTATTCAAAATCCAGAAGTTGGAGCTTTGAGGATATCAGAGCAGAAAGCAGAGAGTATCAGACCAATGCATAGGCCTGACAAAGGGGGAACAATGGCAGCTCAAAGAAACGCGCTTGAGGTGAACCATTTCCATGTTGTGTTCGATGAAAAGAGAGTGATATTCCACTACGATGTGGATGTGAAGGCCAAGGCTCCACCCATGAACAATCGGCCTCAGAAGATTTCCAAGTTTCATCTGTTGCTGATTCGGGATAAGCTGTTTTCCGATCACGCGTTCCCGAGTTCGGCGTACGACGGCGAAAAGAACATGTTCAGCGCGGAGCGGTTGACGGAAGGAACCTTCGATGTGGAGGTGGTGAAAGGTGGGGACGCAAGAAGAATGGTTTGGTATTCCGTAACTCTTACACTTGTGAAGGTGCTTGAACTCCGCAAGTTGAGAGATTACTTGAGTGGAAAGGTTCTTTCGATTCCTAGAGATGTTTTACAGGGCTTGGATTTGGTAGCGAAGGAGAATCCCGCGAAGCAGTGTGATATGGTTGGGTGCTGCTTCTTCCCCAAGGACCATCCCATAAGTCCGAGAGAATCTAAAGGGATAATTGCAACAGGAGGGTTTCAGCAGAGTCTTAAGCCCACTTCTCAGGGCTTGTCCTTGTGCCTCGACTATTCCGTTTTATCGTATTTTGGGGAGGACAAACCGGTGTTGAAGTTTCTGCACGAACAGATTGAGAACTTCAATTTGAGGATGTTTCCCAAGTTCAAGAAAAGAGTTGAGGATTTACTTGTCGGGTTGAAAGTTAATGTGACCCACCGGAGGACGAAGCAGAAATACACTATAACAAGGTTGACACCCATGGTTACGAGCAAGATCAGATTCCCTGTTTTGGACACTGATGGATGGATTCCAGAACCGGAGTGTAGTCTGATTGATTACTTTTTCAGGAAGCATCAGGTGGAGATTCAACACAAGGACATTCCTGCCTTGGATTTTGGAGGCAACAAGATGAATTATGTACCCATGGAGTTGTGTGTGTTGGTTAAGGATCAAAGATGCCCCAAAGGTAACTTACTGAATACAGATGCTGGCAGTCTGTTGAGAAGCATGTCACTGGCTCCTGCAGGAGAGAGGCGAAATAAAATAAGAACTATAGTGAAATCAGAGGAAGGACCCTGTGGTGGTGGTGTTATTGAGAATTTTGGAATGCGTGTGCACACTTCCATGACAAAAGTGACTGGACGTGTAATTCAGCCCCCAGAATTGAAGATAGCTAATCGAAGTGGTGAGATTATTAGTATGGCACTGGAAGTGGGGAAACCTCAGTGGAATCTAAAGGAAGGATCAATGGTTGAAGGCAAGCCGCTTAAATGTTGGGGCATTCTTTATTTTTCTGATTCCAAGTGCCAATTTAAAAGCGAGCAGTTCACTAAAAATCTTCGTAGGAAATGCGGATTACTCGGCATTGAAATGGGGAAGCCAGCTTGGTCTGAAGAATTTTCTATCTCGATTCTTCGCAAATACGATTCGCTGTGTGAAATACTTAAAGAAATTGATTGTCAGGTTCAACAAAAATGTGAACAACGGCTGCAGATTCTTCTTTGTGTGATGGCCGACAAAGATTCAGGTTACAAGTGCCTCAAATGGATTGCTGAGACCAAGGTTGGGGTAGTGACACAATGCTGCTTACGTACTCATGCTAATGATGCGAAGGACCACTTTCTTACAAATCTTGCCCTCAAAATGAATGCCAAAGTTGGAGGAAGTAATGTAGAGCTCATGAATAGGCTTCCAAACTTTGACGGCCAAGGTCATGTTATGTTCATAGGAGCTGATGTTAATCATCCAGCTTCCAGGGACATCAACAGCCCATCAATTGCTGCCGTAGTTGCCACTGTTAATTGGCCTGCTGCAAATCGCTATGCTGCGCGTGTTTGTGCTCAACGTCATCGGGTTGAGAAAATTTTGAATTTTGGGAGAATTTGCCTTGAACTAGTTTCATATTACAATAGGTTGAACAAAGTGTGGCCAGAAAAAATTGTTATCTTTCGAGATGGCGTAAGCGAAAGTCAATTTCATATGGTTCTCACGGAAGAGTTGGAAGATTTGAAATCAGTGTTTCGTGATTCAAACCACTCGCCAACCATCACTCTTATTGTTGCACAAAAGCGACATCATACTCGATTTTTTGTGAAGGATCGAAATTTCAATGTGTTACCTGGAACAGTTGTGGACACAAAAGTAGTACATCCTTTTGAATTTGACTTCTACCTTTTTAGTCACAAGGGGATATCGGGTACAAGCAAGCCCACTCACTATCATGTGTTATGGGATGAGCACAAATTTACATCTGATGATTTGCAGAAACTCATATACGAAATGTGCTTTACCTTTGCAAAGTGCACTGGACCTGTATCTTTAGTTCCTCCAGTGTACTATGCTGATCTAGCTGCATATAGAGGCCGGTTGTACTATGAAGCAATGAATGAAACCAAATCTGCTCGCTCTGCCACTACTCGATCTTCTTCGGCAGTTTCTAATTTAAATGATGAAGGGTGTTACAAGTTGCACCCCGATGTGGAAAACCTTATGTTCTTCATTTGA 2916 0.4448 MERGRDSYGDRGSGSYGGADGNAGRYNSRDRYGSAGRSSYGGGDSYSGRRGRFYQRPQLSSGNEQSSTSQPQPQARWQPKVNPSSAGESSEPHGSQPQTETETEKQTIQNPEVGALRISEQKAESIRPMHRPDKGGTMAAQRNALEVNHFHVVFDEKRVIFHYDVDVKAKAPPMNNRPQKISKFHLLLIRDKLFSDHAFPSSAYDGEKNMFSAERLTEGTFDVEVVKGGDARRMVWYSVTLTLVKVLELRKLRDYLSGKVLSIPRDVLQGLDLVAKENPAKQCDMVGCCFFPKDHPISPRESKGIIATGGFQQSLKPTSQGLSLCLDYSVLSYFGEDKPVLKFLHEQIENFNLRMFPKFKKRVEDLLVGLKVNVTHRRTKQKYTITRLTPMVTSKIRFPVLDTDGWIPEPECSLIDYFFRKHQVEIQHKDIPALDFGGNKMNYVPMELCVLVKDQRCPKGNLLNTDAGSLLRSMSLAPAGERRNKIRTIVKSEEGPCGGGVIENFGMRVHTSMTKVTGRVIQPPELKIANRSGEIISMALEVGKPQWNLKEGSMVEGKPLKCWGILYFSDSKCQFKSEQFTKNLRRKCGLLGIEMGKPAWSEEFSISILRKYDSLCEILKEIDCQVQQKCEQRLQILLCVMADKDSGYKCLKWIAETKVGVVTQCCLRTHANDAKDHFLTNLALKMNAKVGGSNVELMNRLPNFDGQGHVMFIGADVNHPASRDINSPSIAAVVATVNWPAANRYAARVCAQRHRVEKILNFGRICLELVSYYNRLNKVWPEKIVIFRDGVSESQFHMVLTEELEDLKSVFRDSNHSPTITLIVAQKRHHTRFFVKDRNFNVLPGTVVDTKVVHPFEFDFYLFSHKGISGTSKPTHYHVLWDEHKFTSDDLQKLIYEMCFTFAKCTGPVSLVPPVYYADLAAYRGRLYYEAMNETKSARSATTRSSSAVSNLNDEGCYKLHPDVENLMFFI* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1033 971 MobiDBLite consensus disorder prediction 1 136 - -
Pvu2g1033 971 SMART PAZ_2_a_3 338 470 IPR003100 GO:0005515
Pvu2g1033 971 SMART DUF1785_2 284 336 IPR014811 -
Pvu2g1033 971 SUPERFAMILY PAZ domain 333 491 IPR036085 GO:0005515
Pvu2g1033 971 Pfam Argonaute linker 1 domain 286 330 IPR014811 -
Pvu2g1033 971 Gene3D paz domain 332 458 - -
Pvu2g1033 971 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 118 970 - -
Pvu2g1033 971 ProSiteProfiles Piwi domain profile. 636 930 IPR003165 GO:0003676
Pvu2g1033 971 ProSiteProfiles PAZ domain profile. 338 453 IPR003100 GO:0005515
Pvu2g1033 971 Pfam PAZ domain 347 461 IPR003100 GO:0005515
Pvu2g1033 971 Pfam N-terminal domain of argonaute 145 274 IPR032474 -
Pvu2g1033 971 Pfam Piwi domain 637 929 IPR003165 GO:0003676
Pvu2g1033 971 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 118 970 - -
Pvu2g1033 971 MobiDBLite consensus disorder prediction 54 114 - -
Pvu2g1033 971 Gene3D - 706 971 IPR036397 GO:0003676
Pvu2g1033 971 CDD Piwi_ago-like 501 929 IPR045246 -
Pvu2g1033 971 SMART Piwi_a_2 636 930 IPR003165 GO:0003676
Pvu2g1033 971 CDD PAZ_argonaute_like 339 452 - -
Pvu2g1033 971 Gene3D - 520 698 - -
Pvu2g1033 971 SUPERFAMILY Ribonuclease H-like 625 931 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1033 Pvu-Chr2 19665509 19669530 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1033 2 19665509 19669530 Pvu2g1033 2 19665509 19669530 ECH
Pvu2g1033 2 19665509 19669530 Pvu3g2752 3 49397088 49399268 PCT