Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g1026 ATGGGGCACGACCAGAACCAGAGATCTCTGATCTACGCGTTCGTCTCTCGCGGCACCGTGATTCTTGCCGAGTACACTGAATTCAGCGGCAACTTCAACACCATCGCTTTTCAGTGCCTCCAGAAGCTCCCTGCCTCCAACAATAAATTCACCTACAACTGCGACGGCCACACCTTCAATTACCTAGTCGACAACGGATTCACGTATTGTGTTGTTGCGGATGAGTCGATTGGGAGACAGGTGCCTGTGGCTTTTCTGGAGCGCGTGAAGGATGATTTTCTTGCCAAGTACGGCGGCGGGAAGGCGGCGACAGCAGCCGCCAACAGCCTGAACAAGGAATTCGGGTCCAAGTTGAAGGAGCATATGCAGTACTGTGTTGAGCACCCTGAAGAGATTAGCAAGCTTGCTAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAACATTGAGAAGGTTCTGGACAGAGGGGAAAAGATAGAGCTTCTGGTAGACAAGACTGAAAATCTTCATCACCAGGCACAAGACTTCAGGAATTCTGGGACCAAAATCCGTAGAAAAATGTGGCTGCAAAACATGAAGGTAAAGCTGATTGTGTTGGCAATTTTGATAGCCCTGATCCTCATAATAGTCCTCTCTGTTTGCCGTGGGTTCAATTGTGGAAAAAATTAA 681 0.4831 MGHDQNQRSLIYAFVSRGTVILAEYTEFSGNFNTIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGFTYCVVADESIGRQVPVAFLERVKDDFLAKYGGGKAATAAANSLNKEFGSKLKEHMQYCVEHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMKVKLIVLAILIALILIIVLSVCRGFNCGKN* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g1026 226 SUPERFAMILY SNARE-like 10 125 IPR011012 -
Pvu2g1026 226 Gene3D - 132 218 - -
Pvu2g1026 226 ProSiteProfiles Longin domain profile. 14 118 IPR010908 -
Pvu2g1026 226 SUPERFAMILY SNARE fusion complex 129 196 - -
Pvu2g1026 226 CDD Longin 11 125 IPR010908 -
Pvu2g1026 226 SMART Longin_2 35 117 IPR010908 -
Pvu2g1026 226 Pfam Regulated-SNARE-like domain 38 114 IPR010908 -
Pvu2g1026 226 PANTHER SNARE PROTEINS 7 174 - -
Pvu2g1026 226 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 134 194 IPR042855 -
Pvu2g1026 226 ProSitePatterns Synaptobrevin signature. 152 171 IPR001388 GO:0016021|GO:0016192
Pvu2g1026 226 PRINTS Synaptobrevin signature 139 158 IPR001388 GO:0016021|GO:0016192
Pvu2g1026 226 PRINTS Synaptobrevin signature 159 178 IPR001388 GO:0016021|GO:0016192
Pvu2g1026 226 PRINTS Synaptobrevin signature 195 214 IPR001388 GO:0016021|GO:0016192
Pvu2g1026 226 Pfam Synaptobrevin 133 218 IPR042855 -
Pvu2g1026 226 CDD R-SNARE 134 192 - -
Pvu2g1026 226 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 7 174 - -
Pvu2g1026 226 Gene3D Longin domain 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g1026 Pvu-Chr2 19490310 19495223 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1026 2 19490310 19495223 Pvu2g1026 2 19490310 19495223 ECH