Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0987 ATGTCGGATTCATTTGCTAGTACCTTTCACTCTTCCACTGCAAACATCACCCACAATTCCCATGCAACCCCCAAAATCACCACATTATGCTCGATAGCCCAACCTTATTGTATTTGCACTCACTGCAACCACATCCTCGCCTTCAACCAGCATGTTGGTAATGTAGCAGAGGAAGGGACAAATAACACAGGGTCCCATGTGCAGTCCCAGCAAAGCACAAGGTGGAGTCCAACGCCAGTTCAGTTACTAGTCCTTGAGGAATTGTATAGACAAGGCACTAAAACACCATCAGCTGAACAGATTCAACAAATAGCTTCACAGTTGCGCCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAGGCGAGAGAGAGACAAAAGAGGCGCCGCAGGGAGATGGAGGAAAATAATGCTGCTTCTTCTAGTGAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTCGACATGCAGAGGAATCTGCTGCACTGGATATAGCAGAAAAGGGCTCTCATGGGTGCACTCAGTTTGAGGAGAGAGGCATACAAGTTTTGAGGAGAAACATAGCAGAAAGGAAGTTGCAATTGCAAGATAACATGGAAATGCCTTGTTTCCCTCCCACTACTATGGCAGCTCTTGCAACTTCACACAGAACACTTAACGCACAACTTAGTTACAACAGAGAAAGTTTAAACTGCTATGATGGAGAAAATGCAGATCCTCGAACCCTTGATCTATTTCCACATAAGAGGGATGACCAAGATGACATTTGTCTTGCTGAGAGGAAATCTATGTTCTGTGCCAGTGCTTCTATGGACGCTGATATCACCTCAAGCCAGTATTTTGAGTTTCTTCCTTTAAGAAACTGA 918 0.4477 MSDSFASTFHSSTANITHNSHATPKITTLCSIAQPYCICTHCNHILAFNQHVGNVAEEGTNNTGSHVQSQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENNAASSSEGLKETGCGVKETKKWASTSNCSRHAEESAALDIAEKGSHGCTQFEERGIQVLRRNIAERKLQLQDNMEMPCFPPTTMAALATSHRTLNAQLSYNRESLNCYDGENADPRTLDLFPHKRDDQDDICLAERKSMFCASASMDADITSSQYFEFLPLRN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0987 305 Gene3D - 56 147 - -
Pvu2g0987 305 SMART HOX_1 70 137 IPR001356 GO:0003677
Pvu2g0987 305 Pfam Homeodomain 72 132 IPR001356 GO:0003677
Pvu2g0987 305 CDD homeodomain 73 128 IPR001356 GO:0003677
Pvu2g0987 305 ProSiteProfiles 'Homeobox' domain profile. 68 133 IPR001356 GO:0003677
Pvu2g0987 305 SUPERFAMILY Homeodomain-like 66 136 IPR009057 -
Pvu2g0987 305 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 17 305 IPR044555 GO:0003700|GO:0099402
Pvu2g0987 305 MobiDBLite consensus disorder prediction 130 153 - -
Pvu2g0987 305 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 17 305 - -
Pvu2g0987 305 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0987 Pvu-Chr2 17408377 17410875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0987 61 305 Wox Gene Family AT3G18010 34.528 9.95e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pvu2g0987 Homeodomain 3.7e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0987 2 17408377 17410875 Pvu2g0987 2 17408377 17410875 ECH