Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0969 ATGGCGGTTTTACCGAGTACCTCCTCCACCTTGGAATTGACCATATCTATCCCTGGCTTTGCTTCTTCACCAACTCTTCTGCCTTCATCATCTGTGAAAGAATTGGACATAAACCAAGTACCTCTAGAAGAAGATTGGATGGCATCAAACATGGAAGATGAAGAAGATAGCAGCAATGGAGACCCTCCCCGCAAGAAACTCCGTCTCACAAAGGAACAATCTCGTCTCCTTGAAGAAAGCTTTAGACAAAACCACACCCTAAACCCAAAGCAGAAAGAGTCTTTGGCAATGCAACTGAAGCTGCGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAGATGGAGTGTGAGTACCTGAAGAGGTGGTTTGGGTCACTGACAGAGCAGAACCGAAGGCTTCAGAGGGAAGTGGAGGAACTGAGGGCCATGAAGGTGGGGCCACCCACCGTAATTTCCCCACACTTTTGTGAGCCACGCCCAGCCTCCACACTCACCATGTGTCCCAGCTGTGAGCGCGTCACAACCACCGCCGACAAACCGCCATCCGCCGCCGCCACTTTGTCCGCTAAAGTTCCCGCGCAGTCCCCTCAACCTTCTGCCGCCTGTTGA 639 0.5243 MAVLPSTSSTLELTISIPGFASSPTLLPSSSVKELDINQVPLEEDWMASNMEDEEDSSNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHFCEPRPASTLTMCPSCERVTTTADKPPSAAATLSAKVPAQSPQPSAAC* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0969 212 CDD homeodomain 63 121 IPR001356 GO:0003677
Pvu2g0969 212 MobiDBLite consensus disorder prediction 43 66 - -
Pvu2g0969 212 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Pvu2g0969 212 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Pvu2g0969 212 SMART HOX_1 62 124 IPR001356 GO:0003677
Pvu2g0969 212 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Pvu2g0969 212 PANTHER - 1 196 - -
Pvu2g0969 212 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Pvu2g0969 212 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Pvu2g0969 212 Gene3D - 56 128 - -
Pvu2g0969 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 196 - -
Pvu2g0969 212 Coils Coil 133 153 - -
Pvu2g0969 212 MobiDBLite consensus disorder prediction 184 212 - -
Pvu2g0969 212 SUPERFAMILY Homeodomain-like 49 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0969 Pvu-Chr2 17014117 17017506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0969 32 194 Homeobox Transcription Factor Family AT1G70920 63.690 1.71e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu2g0969 Homeodomain 3.6e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0969 2 17014117 17017506 Pvu2g0969 2 17014117 17017506 ECH