Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0954 ATGGCCGGCGAACTCGCCGGAGACCACACGCCAGAGCTTCTCTGTCTGGTCCATGACATCGCCGGAATGTGCCCCGGCTCCTCCTCCGCCACGCCCATTGCCGCCGACGCCCTGTTCCGCAAGGACTGCACCGATCTGGTTCGCCGGATCTCCCTCCTCACCCACTTGTTCGAGGAGATTAGAGAACTCAACAACAACAACAACAACAGCTACAATGTTGTCCCTTCCGCTTCCTCCTCTTCTTCCTCCTCTTCCGCGGCATCTTGGTCATCTGATCTTGTCCTCGCTCTTCACTCTGCAAGAAGCTTGCTTTCCGTCGCCAGAAATTTCCGTTCCAATTGCTCCTCTGATGGAGCTGCAAAGACCATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAGAAACTGTTGAGTAATTTGTCGTATGACAATTTGGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACGCAATTGAAACGAGCCACAGAAAAATATGGGTTTATGATTTCAAAGATGCCATCTCATGAATTATCCCAGCCACTGACTGAAGAAATTAGTCAGGTTCTTGCCAAATCCGTGGGTGGATTGTACAAACAACATAGCTGTCCTGAAAATTTATCAGAACTAGACAGCATTTCTAAGAACAATGGAGAGAATAATAGCAGCACTAATCGGGCTGGATCTCGCTTGGAAAGAGCAAGGAGCATCCATGCTTCTTCTGAAGTTTTCTTTTTGAACGAATCTGATCCTGAAAGTCAAGAAATTTCTGAGACAAAGAGTCTCCCTGAGGTTAAAAAGCCTGAAGCAATTGTGATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCGACTGGTCAGACGTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCGAAAACTCAGCAGAAGCTCCAACATTTAACCCTCACACCAAATTATGTTTTAAGGAGCCTTATTTATCAGTGGTGTATAGAGCACAACATTGAGCAGCCAACAGGACTAACTAATGGGAAAATAAAGAAGAGTGATGGGTCGTTCAGAGACGTTACAGGTGACATAGCAGCAATTGAAGCTCTGGTGCGGAAGCTCTCCAGTCGGTCTGTTGAGGAGCGTAGAGCAGCTGTTACCGAAATTCGATCACTATCCAAACGTAGTACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTCTAACATCAGAAGATGTACTGACGCAAGACAATGCTGTTACATCAATTCTAAACCTTTCCATTTATGAAAATAACAAAGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGTGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTTTTCAGCTTGTCACTTGCAGATGAGAACAAAATCATAATTGGTGCGTCAGGAGCCATACCCGCATTGGTAGAATTGCTCCAAAACGGGAGTCCTAGAGGAAAGAAGGATGCAGCAACAGCATTATTCAATTTATGCATTTATCAAGGGAACAAGGGCAGGGCCATTAGGGCAGGGATCATCACAGCATTGTTGAAAATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAAATTGCTATAGTAAAAGCGAGCACTATACCAGTTTTGATAGATCTTTTGAGGACCGGATTGCCTCGCAATAAAGAGAATGCAGCTGCTATTCTTCTTGCCTTGTGCAAGAGGGATGCCGATAATCTTGCTTGTATAAGTAGACTTGGTGCCGTCATACCTCTTTCTGAACTTGCTCGAACTGGTACAGAGAGGGCCAAACGGAAAGCTACTTCATTACTGGAGCATCTTCGTAAGTTGCAGCAACTTTGA 1971 0.4485 MAGELAGDHTPELLCLVHDIAGMCPGSSSATPIAADALFRKDCTDLVRRISLLTHLFEEIRELNNNNNNSYNVVPSASSSSSSSSAASWSSDLVLALHSARSLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLSYDNLDISEEVKEQVDLVRTQLKRATEKYGFMISKMPSHELSQPLTEEISQVLAKSVGGLYKQHSCPENLSELDSISKNNGENNSSTNRAGSRLERARSIHASSEVFFLNESDPESQEISETKSLPEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLIYQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSSRSVEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0954 656 Coils Coil 636 656 - -
Pvu2g0954 656 Gene3D - 557 655 IPR011989 -
Pvu2g0954 656 MobiDBLite consensus disorder prediction 213 234 - -
Pvu2g0954 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 500 IPR000225 GO:0005515
Pvu2g0954 656 Pfam U-box domain 277 348 IPR003613 GO:0004842|GO:0016567
Pvu2g0954 656 Pfam Armadillo/beta-catenin-like repeat 407 445 IPR000225 GO:0005515
Pvu2g0954 656 Pfam Armadillo/beta-catenin-like repeat 489 527 IPR000225 GO:0005515
Pvu2g0954 656 Gene3D - 359 451 IPR011989 -
Pvu2g0954 656 Gene3D - 452 556 IPR011989 -
Pvu2g0954 656 MobiDBLite consensus disorder prediction 213 236 - -
Pvu2g0954 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 350 IPR013083 -
Pvu2g0954 656 SUPERFAMILY RING/U-box 276 351 - -
Pvu2g0954 656 SMART arm_5 570 610 IPR000225 GO:0005515
Pvu2g0954 656 SMART arm_5 488 528 IPR000225 GO:0005515
Pvu2g0954 656 SMART arm_5 406 446 IPR000225 GO:0005515
Pvu2g0954 656 SMART arm_5 529 569 IPR000225 GO:0005515
Pvu2g0954 656 SMART arm_5 447 487 IPR000225 GO:0005515
Pvu2g0954 656 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 16 653 - -
Pvu2g0954 656 SUPERFAMILY ARM repeat 376 650 IPR016024 -
Pvu2g0954 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
Pvu2g0954 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Pvu2g0954 656 PANTHER U BOX DOMAIN-CONTAINING 16 653 - -
Pvu2g0954 656 Coils Coil 149 169 - -
Pvu2g0954 656 CDD RING-Ubox_PUB 281 323 IPR045210 -
Pvu2g0954 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 499 541 IPR000225 GO:0005515
Pvu2g0954 656 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Pvu2g0954 656 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0954 Pvu-Chr2 16556078 16559423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0954 37 655 U-box Gene Family AT1G23030 62.319 0.0 731
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0954 2 16556078 16559423 Pvu2g0954 2 16556078 16559423 ECH