Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0868 ATGTCTGGGGCTGTTAAAGACTCGGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGTCACGCCACCACCAGGTTTCTGCTAATGGTTCTTCTTCTGAACCTGCTCCTCCTCAAGATTATTCTCACCATCACAGTCCTCCTTCATCTTCATCTTTTCCACGTGAAGTGATGTCCACAACGGAACGTGAACCTGAGAGGGATAAGGAACCATCAGGGAAAGAACTCACCTCAACACAAGATGACGAAGCCTTACATGAAGAACTAAAATCTCCAACATCTTCATGCAATCTCGAGAACCCCAAGACCCCCTCAACTGAAATAGAAACTTCCTTAATGAAATCACCTAAAAAGGGAGACCAAACTGACACGACAAGCGCATCAGAGGACAAAACTCCAAAGAAACCAGACAAAATACTTCCATGCCCTCGTTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTATAACGTGAATCAGCCACGCCATTTCTGCAAGCACTGCCAGAGATACTGGACTGCAGGAGGGACCATGAGGAATGTGCCAGTTGGTGCAGGTCGCCGCAAGAACAAAAACACTTCTTCTGCTGCATCACATTATCGTCAAATCATGGTTCCCGAGACCCTTCAGAACGGATCATTGCACAGTGCTGTGTTGACCTTTGGATCAGATTTCCCTCTCTGTGACTCCATGGCTTCTGTGTTGAGCCTTGCTGAGAAAACACAAAATGGTGTCCTCAACGGGTTTCATTCACCTAAGCATAATGTTAGCACTGTTAATAATAATAATAGTGGGGATGATATTAACTCAGTTGGTGCTTCTGTAATGGCTTCAACTTTGTGTGAGAAGAGAGACAATGCTACTAGCTCTCATGATGAATCAGTGGATAAGATTTATCATCAAGGTTTCAGTCCTCAATTGTGTCTCCCAGGTTCTTCATCATCTTCTTCTCCTTGGCCTTATCCGTGGAACCCTGCAATGACTCCTTCTGCTTTTTACCAACCTGTGTCATTCTACCCCACACAAGCATTTTGGGGATGCATGCCACCACCATCTTGGAGTGTAAATTACCAATCTGCCTCTAGTTCTGGTCCAAACTCACCAACCTTGGGGAAACATTCAAGAGATGGAGACATCTTGTTGCAGAAGCCTGGCACAGAAAGCAGCAGCAACATGGCAGAAAATAGCAACACTGTGTTGATCCCGAAGACGCTGAGAATTGATGACCCTACAGAAGCTGCAAAGAGCTCTATATGGTCAACACTGGGGATCAAGAATGAGAAGGGGAACTCTCTCAATGGAGGAGGCCTTTTCAAGGCATTTGCATCAAAGGGAGGCAGTGATGACAAGAAGAACCATGTGGTGGTTGAAGCATCCCCAGTGTTGCAAGCTAACCCCGCAGCTTTGTCAAGGTCTCTTGTGTTCCATGAGAGGACATAG 1443 0.4574 MSGAVKDSAIKLFGRTISLSRHHQVSANGSSSEPAPPQDYSHHHSPPSSSSFPREVMSTTEREPERDKEPSGKELTSTQDDEALHEELKSPTSSCNLENPKTPSTEIETSLMKSPKKGDQTDTTSASEDKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNTSSAASHYRQIMVPETLQNGSLHSAVLTFGSDFPLCDSMASVLSLAEKTQNGVLNGFHSPKHNVSTVNNNNSGDDINSVGASVMASTLCEKRDNATSSHDESVDKIYHQGFSPQLCLPGSSSSSSPWPYPWNPAMTPSAFYQPVSFYPTQAFWGCMPPPSWSVNYQSASSSGPNSPTLGKHSRDGDILLQKPGTESSSNMAENSNTVLIPKTLRIDDPTEAAKSSIWSTLGIKNEKGNSLNGGGLFKAFASKGGSDDKKNHVVVEASPVLQANPAALSRSLVFHERT* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0868 480 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 4 480 - -
Pvu2g0868 480 MobiDBLite consensus disorder prediction 122 137 - -
Pvu2g0868 480 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Pvu2g0868 480 MobiDBLite consensus disorder prediction 21 137 - -
Pvu2g0868 480 MobiDBLite consensus disorder prediction 21 57 - -
Pvu2g0868 480 PANTHER CYCLIC DOF FACTOR 2 4 480 IPR045174 GO:0003700|GO:0006355
Pvu2g0868 480 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Pvu2g0868 480 MobiDBLite consensus disorder prediction 358 395 - -
Pvu2g0868 480 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Pvu2g0868 480 MobiDBLite consensus disorder prediction 89 121 - -
Pvu2g0868 480 MobiDBLite consensus disorder prediction 58 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0868 Pvu-Chr2 13002774 13006753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0868 119 479 C2C2-Dof Transcription Factor Family AT3G47500 46.923 5.66e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu2g0868 zf-Dof 5.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0868 - - gmx:100775201 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0868 2 13002774 13006753 Pvu3g1956 3 40146058 40147729 PCT