Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0224 ATGATCCAAGAACTGTTGGGTGCTGCTACTGCTACCCTCATAGCAGGAGAAAGAAAATTCTCAATTAATAATGGTGGAGGAGGTGGAGGAGGAGGAGGAGGAGGACATCTACTAACACCACCCATGCCATCTTCTGCTTCTCCATCTCCTTCATGCACAACAACTATCACCACTTCCACTAACACCGCCACTTCGTCCAACTCAGAGAACCAAAATTTGAGGTGCCCTCGTTGTGATTCATCAAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGGTACTGGACCAAAGGTGGTGCTCTCCGGAATGTTCCCATCGGAGGTGGCTGCAGGAAAAGCAAGAGCTCCGGCATGTCCAACTCGGTGGCAAAGCAAGCAGCCACAAAGATGAAAGCAGTGGCATCAGAGCTTGGAAGGCCACAGGGACTCTTTGATCAAGAGCTTCCACAAACCCCAATCTTGTGGGGTTCACCGCAAAATACTCAACTGATGGCTTTACTGAGAGCTACCCAAAACCAAAATCAAAACCCTAACCCTAGTCCCGTGTCAATTGCTGTCAAGAGAGAAGGGAACTCGCTGGGATCTCACTCCCACATGGTCACTGAGCCATTGCTCGCAAATGGGTTGTTGAATAGTACTAGAACTAGTCTAGGCTATGATGGTGTGGGAGAACTTCCTTCACTGGGTCTATGCAGCTCCTTTTGGAGGAATAATCAAGATCAGAATCAGCAACAAAGCAACGGTTTTGTACTTGCAGAACAGCAAAGTGGTGGAGTTCAAGAACTTTACCACAAGCTCAGGTCATCGTCATCAGTTAATTATTGTGGCAGTGATAATTCGCCAGTGTTTCTCGGCAACATGGCTTCTTCCTCTTCTTTGTCCAACATTTTGGAGTCATCTTCAGTTTCTGGCAGCGAATTCGGGTGCTGGAATCCAACCCTTTCCTGGTCTGACCTTCCCACAACAAGTGGAGCATATCCTTAA 1020 0.4775 MIQELLGAATATLIAGERKFSINNGGGGGGGGGGGHLLTPPMPSSASPSPSCTTTITTSTNTATSSNSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSSGMSNSVAKQAATKMKAVASELGRPQGLFDQELPQTPILWGSPQNTQLMALLRATQNQNQNPNPSPVSIAVKREGNSLGSHSHMVTEPLLANGLLNSTRTSLGYDGVGELPSLGLCSSFWRNNQDQNQQQSNGFVLAEQQSGGVQELYHKLRSSSSVNYCGSDNSPVFLGNMASSSSLSNILESSSVSGSEFGCWNPTLSWSDLPTTSGAYP* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0224 339 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Pvu2g0224 339 PANTHER F-BOX FAMILY PROTEIN 39 337 - -
Pvu2g0224 339 MobiDBLite consensus disorder prediction 25 73 - -
Pvu2g0224 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 337 IPR045174 GO:0003700|GO:0006355
Pvu2g0224 339 MobiDBLite consensus disorder prediction 48 73 - -
Pvu2g0224 339 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Pvu2g0224 339 Pfam Dof domain, zinc finger 71 127 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0224 Pvu-Chr2 2381355 2382917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0224 48 133 C2C2-Dof Transcription Factor Family AT5G65590 64.773 9.05e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu2g0224 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g0224 - - gmx:100800420 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0224 2 2381355 2382917 Pvu2g0224 2 2381355 2382917 ECH
Pvu2g0224 2 2381355 2382917 Pvu3g2551 3 47381617 47383283 PCT