Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g0153 ATGGACCGTATCAAAGGCCCATGGAGCCCGGAGGAGGACGAGGCTCTGCAGAGGCTCGTCGAGAAGCACGGTCCCAGGAACTGGTCCCTCATCAGCAAGTCCATCCCTGGCCGCTCCGGCAAATCCTGCAGGCTCCGCTGGTGCAATCAGCTCTCCCCCCAGGTCGAGCACCGGGCCTTCACGCCCGAAGAGGACGACACCATAGTCAGGGCCCATGCTCGCTTCGGCAACAAATGGGCCACCATAGCCCGCTTGCTCCAGGGCAGAACCGACAACGCAATCAAGAACCACTGGAACTCCACGCTGAAGCGCAAGTGCGCCTCTACCATGATGGACGACCACCCTCCGCCGCTCAAGAGGTCCGTCAGTGCCGGCGCGGCCATCCCCGTCTCCACCGGCCTCTACATCAACCCTCCCACACCCGGTAGTCCCTCCGGATCCGATGTGAGTGAATCCAGCGCGCCAGTTGCCTCCCCCTCACACGTCTTCCGTCCCGTGCCCAGGACCGCCGCGGTTCTTCCTCCCGTAGAAACTACCTCCTCCTCCTCCAATGACCCTCCAACTTCCCTTTCACTGTCCCTCCCCGGCGTCGACTCTTCCGAGGTCTCCAATCGGGTAACCGAGCCAGCCCATCCCGTACCCCCGCCACAGCCCTCGAACACTATCCCGTTGCTGCCAATGATGGCTGCTCCGGTGGCGATGGTGCCGCAGTTGAAGCCACCGGGGTTGGGGGCTTTCAATCTGAGTGCGGAGTTTTTGGTGGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTACATGGAGCGCCAGAATCCGAATGGGATGTGTTTTCAGGCAGCAGAGGATGGCTTTAGGAATACTTCCGTCAAGCGAATTGGGATTAGCAGGGTGGATTCGTAA 903 0.6069 MDRIKGPWSPEEDEALQRLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIVRAHARFGNKWATIARLLQGRTDNAIKNHWNSTLKRKCASTMMDDHPPPLKRSVSAGAAIPVSTGLYINPPTPGSPSGSDVSESSAPVASPSHVFRPVPRTAAVLPPVETTSSSSNDPPTSLSLSLPGVDSSEVSNRVTEPAHPVPPPQPSNTIPLLPMMAAPVAMVPQLKPPGLGAFNLSAEFLVVMQEMIRKEVRSYMERQNPNGMCFQAAEDGFRNTSVKRIGISRVDS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g0153 300 MobiDBLite consensus disorder prediction 136 157 - -
Pvu2g0153 300 CDD SANT 7 49 IPR001005 -
Pvu2g0153 300 MobiDBLite consensus disorder prediction 133 162 - -
Pvu2g0153 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Pvu2g0153 300 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Pvu2g0153 300 MobiDBLite consensus disorder prediction 175 206 - -
Pvu2g0153 300 PANTHER MYB TRANSCRIPTION FACTOR 2 270 - -
Pvu2g0153 300 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Pvu2g0153 300 CDD SANT 59 102 IPR001005 -
Pvu2g0153 300 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Pvu2g0153 300 SMART sant 56 104 IPR001005 -
Pvu2g0153 300 SMART sant 4 53 IPR001005 -
Pvu2g0153 300 MobiDBLite consensus disorder prediction 175 219 - -
Pvu2g0153 300 Gene3D - 58 121 - -
Pvu2g0153 300 Gene3D - 4 56 - -
Pvu2g0153 300 PANTHER MYB PROTEIN-RELATED 2 270 - -
Pvu2g0153 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Pvu2g0153 300 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Pvu2g0153 300 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g0153 Pvu-Chr2 1692701 1694639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g0153 1 299 MYB Transcription Factor Family AT4G37260 53.172 2.33e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu2g0153 Myb_DNA-binding 1.8e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0153 2 1692701 1694639 Pvu3g2472 3 46311343 46313013 ECH
Pvu9g0700 9 11618726 11620806 Pvu2g0153 2 1692701 1694639 ECH
Pvu1g0257 1 2276980 2278706 Pvu2g0153 2 1692701 1694639 ECH
Pvu2g0153 2 1692701 1694639 Pvu2g0153 2 1692701 1694639 ECH
Pvu2g0153 2 1692701 1694639 Pvu3g3035 3 52031897 52035256 PCT
Pvu3g2472 3 46311343 46313013 Pvu2g0153 2 1692701 1694639 PCT