LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu2g0145	ATGCCTCCTCAAGACCGCCGCCAGCCGCTGTTAGCGGAGGAGCAGGAAGAGACTGCGTACGATTCCTCGGAGAAGGTCGTGGTGGTCGGAATCGACGAGCAGGACGGGGACGTGGAGGCGCCGCCGTTTTCATGGCGGAAGCTGTGGCTGTTCACGGGGCCGGGGTTTCTGATGAGCATCGCGTTTCTGGATCCCGGGAATCTGGAGGGGGATCTTCAGTCTGGGGCAATTGCCGGGTACTCGCTCTTGTGGCTCCTCATGTGGGCTACTGCTATGGGCCTCATTATCCAGCTTCTCTCCGCTCGCCTCGGCGTCGCCACTGGGAGACACTTAGCTGAACTGTGCAGGGAAGAGTATCCTGCATGGGCTAGGATTGTGCTCTGGCTCATGACTGAAATCGCTCTTATTGGCTCTGACATTCAAGAGGTTATTGGGAGCGCTATTGCTATCAGGATTCTCAGTAACGGCGTCGTTCCCCTTTGGGCTGGGGTCGTCATCACCGCTTTCGATTGTTTCATTTTTCTCTTTCTTGAGAACTATGGTGTGAGGAAACTGGAGGCGTTTTTCGCTGTTCTGATTGCCGTAATGGCTCTCTCATTTGCGTGGATGTTTGGTGAAGCAAAGCCCAACGGTGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTGGGTTGCATTATTATGCCTCACAATGTGTTCTTGCATTCTGCGCTTGTTCAGTCAAGGCAGGTTGACCCCAGCAAGAAAGGCCGCGTTCAGGAAGCTCTTAATTACTACTCGATAGAGTCCACCATCGCCCTTGCGGTGTCCTTTATGATTAATATATTTGTTACAACTGTGTTTGCCAAGGGCTTTTATGGTACTGAAATAGCAAACAACATTGGTCTTGTAAACGCAGGGCAGTACCTTCAGGAGAAGTACGGGGGTGGACTTTTCCCAATCCTGTATATATGGGGTATTGGGTTGTTAGCAGCCGGCCAGAGTAGCACAATTACTGGTACTTATGCTGGACAATTTATCATGGGGGGTTTTCTGAATTTAAGGTTGAAAAAGTGGGTGAGGGCATTGATTACTCGAAGTTTTGCAATCATTCCAACAATGATAGTTGCACTTATATTCGATACCACGGAGGAGTCTTTAGATGTTCTGAATGAATGGCTTAATGTTCTCCAATCAGTTCAAATCCCATTTGCACTCATTCCCTTGCTTTGCTTGGTGTCCAAAGAACAGATAATGGGCAGTTTCAGAATTGGCCCTGTCCTCAAGATTATTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAACGGCTACCTATTGCTGGAATTCTTCTCCTCTGAAGTGAATGGAGCAGTGTTTGCCACTATAGTGTGTGTATTAACAGCTGCATATGTTTCATTTATACTTTACCTTATTTCACGGGCCATTACCTATACACCGTGGCAAAGTTTAACCCGATCTAAGACAGTTGCTACCACAGACAATTGA	1524	0.479	MPPQDRRQPLLAEEQEETAYDSSEKVVVVGIDEQDGDVEAPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLIIQLLSARLGVATGRHLAELCREEYPAWARIVLWLMTEIALIGSDIQEVIGSAIAIRILSNGVVPLWAGVVITAFDCFIFLFLENYGVRKLEAFFAVLIAVMALSFAWMFGEAKPNGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPSKKGRVQEALNYYSIESTIALAVSFMINIFVTTVFAKGFYGTEIANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWVRALITRSFAIIPTMIVALIFDTTEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGSFRIGPVLKIISWLVAALVIVINGYLLLEFFSSEVNGAVFATIVCVLTAAYVSFILYLISRAITYTPWQSLTRSKTVATTDN*	508

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu2g0145	507	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	7	507	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu2g0145	507	Pfam	Natural resistance-associated macrophage protein	69	430	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu2g0145	507	PANTHER	METAL TRANSPORTER NRAMP3 PROTEIN	7	507	-	-
	Pvu2g0145	507	PRINTS	Natural resistance-associated macrophage protein signature	127	153	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu2g0145	507	PRINTS	Natural resistance-associated macrophage protein signature	157	176	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu2g0145	507	PRINTS	Natural resistance-associated macrophage protein signature	182	203	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu2g0145	507	PRINTS	Natural resistance-associated macrophage protein signature	231	254	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu2g0145	507	PRINTS	Natural resistance-associated macrophage protein signature	338	357	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu2g0145	507	PRINTS	Natural resistance-associated macrophage protein signature	366	383	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu2g0145	507	PRINTS	Natural resistance-associated macrophage protein signature	400	419	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu2g0145	507	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	46	424	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu2g0145	507	MobiDBLite	consensus disorder prediction	1	23	-	-
	Pvu2g0145	507	Hamap	Divalent metal cation transporter MntH [mntH].	34	456	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu2g0145	Pvu-Chr2	1609576	1613213	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu2g0145	1	493	Inorganic Solute Cotransporters	AT2G23150	78.088	0.0	794

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu2g0145	K21398		-	gmx:100807811	959.133

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu2g0145	2	1609576	1613213	Pvu2g0145	2	1609576	1613213	ECH
	Pvu2g0145	2	1609576	1613213	Pvu3g2454	3	46129964	46133923	PCT