Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2663 ATGGATAATGGGTGTTTCTCTTCCCCTCGACGTGATTTCCCTGCTGGCTTAAGAGTTCTTGTTGTGGATGATGATCCTACGTGGCTCAAGATCCTTGAGAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTGGCAAGGCATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTTAAACTCCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTGATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTCATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAGCATGTCTATAGAAAAAGGATACACGAGGCTAAAGAATTTGAAAGCTTTGAGAGTTTTGAGAGCATTCACTTAATGACAAATGGATCAGAGCTATCAGATGAGGGGAACTTGTTTGCTGTAGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGTATGGATCCATCATCTACCAAGAAAGCTAGAGTAGTCTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCAGATTGGATTTGATAAAGTTGGGCCCAAGAAAATACTAGATCTGATGAATGTTCCATGGCTGACCAGAGAGAATGTTGCTAGCCACTTGCAGAAATACCGGCTTTATTTGATTAGGATTCAGAAAGAAAACGATCGAAGATCTTCCTCCAGCGGAATGAAGCATTCAGATTTTCCTTCCAAAGATCTGGGAAGTTTTGGATTTCAAAACCCAGTAAACAAGCAACAAAATGATGTTTCAATCGACAGCTACAATTATTCGGATGGATCATTACAGCTGCAGAACGTGGAAAATAAAAGTCATGAAGGCGATAAGGGAACTGTTTCACAGTTCACCATAGCAAAAAAAGGAAGGCCTTTGAGAGAGAGTTCAAGGGTTGGCCTTCAGCAACCTTTTGATTGCTCCATGCCAACACAGTACTCTTGGACTGAAGTTCCACACACGCAACTCAAAGAAGAACACAAGTCACTTGTGCATTTAGAAGATAGCTTCAATCAGATGCCATTACAGGGTAAGCAGCATCCCATCCAAGTTGATCAATCACAATCAGTTGCTTCAATCAGTTCAGTTCCATCTATAAGGGAGGAAGGGGTTGCTGCTTGTATAGAAGCAAAACCTTTGTTTTCAGATTTCAAGAATGATCAATCCAGTTCTGTGAATTCAATAGGGAATGCAGTTGACACCTTTCCAATTCAACCGGGAAGTCTTGTTATGAATGCTCAATCTTTAGCCAGTTCAACTACAAATTCAGGATTGAAAGCACATGGATATAACAATCTCAGTTGCATTTCTGATCTGGAAATTTACCAAAGAAACCTTCTTTTGGGAGCTTCTGCACCTTTGGATGAGGACTTGCATTTCCATTGGCTACAAGGTGAATGTTATAACATGAACTTTGGTCTGCAGAATATAGGAATGCCAGAATATTATGATCCAGGACTTATTGCAGAAGCTCCGAGTCACCTATATGATTCATCCGATTACTCGGTTATGGATCAAGGTCTATTCATAGCATGA 1668 0.4041 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVYRKRIHEAKEFESFESFESIHLMTNGSELSDEGNLFAVEDVTSTKKRKDADNKHDDKECMDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLIRIQKENDRRSSSSGMKHSDFPSKDLGSFGFQNPVNKQQNDVSIDSYNYSDGSLQLQNVENKSHEGDKGTVSQFTIAKKGRPLRESSRVGLQQPFDCSMPTQYSWTEVPHTQLKEEHKSLVHLEDSFNQMPLQGKQHPIQVDQSQSVASISSVPSIREEGVAACIEAKPLFSDFKNDQSSSVNSIGNAVDTFPIQPGSLVMNAQSLASSTTNSGLKAHGYNNLSCISDLEIYQRNLLLGASAPLDEDLHFHWLQGECYNMNFGLQNIGMPEYYDPGLIAEAPSHLYDSSDYSVMDQGLFIA* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2663 555 CDD REC_typeB_ARR-like 19 133 - -
Pvu1g2663 555 PIRSF RR_ARR_type-B 2 521 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pvu1g2663 555 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Pvu1g2663 555 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Pvu1g2663 555 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 530 IPR045279 GO:0009736
Pvu1g2663 555 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 530 - -
Pvu1g2663 555 SUPERFAMILY CheY-like 16 145 IPR011006 -
Pvu1g2663 555 MobiDBLite consensus disorder prediction 315 343 - -
Pvu1g2663 555 Gene3D - 17 188 - -
Pvu1g2663 555 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Pvu1g2663 555 SMART REC_2 17 129 IPR001789 GO:0000160
Pvu1g2663 555 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Pvu1g2663 555 Gene3D - 195 258 - -
Pvu1g2663 555 SUPERFAMILY Homeodomain-like 197 254 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2663 Pvu-Chr1 51391199 51395335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2663 13 257 Response Regulator Gene Family AT2G25180 56.250 2.01e-81 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pvu1g2663 Response_reg 1.4e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2663 1 51391199 51395335 Pvu1g2663 1 51391199 51395335 ECH
Pvu1g2663 1 51391199 51395335 Pvu2g1823 2 32829922 32834360 PCT