Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2383 ATGAAGAGGGATTTCCAACAAGCCTGCGCCGGAGGCCCTGTCAAGGGTGACTCTTCCTCAATGCCCAACGGCAAGGCCAAGATGTGGGAGGAAGACCGCCACCAGCAGGGAGGAGGCATGGATGAGTTGCTCGCGGCCTTGGGTTACAAGGTCCGTGCTTCCGACATGGCAGACGTCGCTCAGAAGCTTGAGCAGCTCGAGATGGTCATGGGGAGTGCCCAGGAAGAGGGAATTTCCCACCTTTCTTCCTACACCGTTCACTACGACCCTACGGATCTCCATTCTTGGGTCCAGAGCATGTTATCTGAACTCAACCCCGAACCCACCACCATCCTCGATCCCTCATCCTTCTTGATCGACAACCCCGTCCACTCTTCCCCCATCCTCACCACCACCTCACGCGTTTTCAACGACGACTCCGAATATGACCTCAGAGCCATTCCTGGAATAGCCGCATATCCTCCTCAACACGCCACAAACAACGCCACCACCATTAGCACTACCACTGCCACCAGCCCCACTACCACCGTCGCCACCACCAACACCCAAACTGTGGAAGAAATCGAACCAGGTACCAACAAGCGCTTGAAGGCTTCCCCAATTGAATCCTCGGAGTCCGCTTCGGAGCCCACCCGCCCCGTAGTTCTCGTTGACTCACAGGAAGCCGGCGTGCGTCTGGTGCACACTCTCATGGCTTGCGCTGAGGCCGTCCAACAGGAGAATCTGAAGCTGGCAGACGCGCTGGTAAAGCACGTGGGCATACTGGCAGCGTCGCAAGCCGGCGCCATGAGGAAAGTGGCGACGTACTTCGCCCAGGCCCTTGCGCGTCGAATCTACGGCATCTTCCCGGAGGAAACTCTTGATTCCTCTCTCTCCGACCTTCTACACATGCACTTCTACGAGTCCTGCCCCTATCTGAAGTTCGCTCACTTCACTGCCAACCAGGCCATTCTGGAGGCCTTCGCCACCGCTGGGAGAGTCCACGTCATCGATTTCGGCCTCAAGCAAGGGATGCAGTGGCCAGCCCTCATGCAGGCCCTCGCATTGCGCCCAGGCGGTCCTCCAACCTTCCGCCTAACCGGAATCGGGCCCCCGCAGCCCGACAACACTGACGCGCTGCAGCAAGTGGGCTGGAAGCTTGCCCAGTTAGCCCAAACCATCGGCGTCCAGTTCGAATTCCGCGGATTCGTCTGCAGCAGCCTCGCAGATCTCGACCCGAACATGCTCGAGATCCGTCCCGGAGAAGCCGTAGCTGTCAACTCCGTCTTCGAGCTCCATCGCATGCTCGCTCGACCCGGATCCGTCGACAAGGTCATGGACACAGTTAAAAACCTCAACCCCAAAATCGTAACCATCGTGGAGCAAGAGGCGAACCACAACGGGCCGGTTTTCTTGGACCGGTTCACTGAAGCCTTGCATTACTACTCGAGTCTGTTTGACTCGCTGGAGGGTTCTTCCTCCTCCACCGGGTTAGGTTCGCCGAGTCAGGATCTGTTGATGTCGGAGGTGTACCTTGGGAAACAGATATGCAACGTGGTGGCGTACGAAGGCGTGGAGCGCGTGGAGCGTCACGAGACTCTGAGCCAGTGGAGGGGGCGAATGGGCTCGGCAGGGTTCGACCCGGTTCATCTCGGGTCAAACGCATTCAAGCAAGCTAGTATGTTGCTGGCGCTATTCGCCGGCGGTGACGGGTACAGAGTGGAGGAGAACAACGGGTGCCTCATGCTTGGGTGGCACACTAGGCCTCTCATCGCCACCTCTGCGTGGAAGCTTCCCTCGCCCGAGTCCTAA 1791 0.5851 MKRDFQQACAGGPVKGDSSSMPNGKAKMWEEDRHQQGGGMDELLAALGYKVRASDMADVAQKLEQLEMVMGSAQEEGISHLSSYTVHYDPTDLHSWVQSMLSELNPEPTTILDPSSFLIDNPVHSSPILTTTSRVFNDDSEYDLRAIPGIAAYPPQHATNNATTISTTTATSPTTTVATTNTQTVEEIEPGTNKRLKASPIESSESASEPTRPVVLVDSQEAGVRLVHTLMACAEAVQQENLKLADALVKHVGILAASQAGAMRKVATYFAQALARRIYGIFPEETLDSSLSDLLHMHFYESCPYLKFAHFTANQAILEAFATAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVQFEFRGFVCSSLADLDPNMLEIRPGEAVAVNSVFELHRMLARPGSVDKVMDTVKNLNPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSSSSTGLGSPSQDLLMSEVYLGKQICNVVAYEGVERVERHETLSQWRGRMGSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPSPES* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2383 596 Pfam GRAS domain family 226 590 IPR005202 -
Pvu1g2383 596 Gene3D - 39 104 IPR038088 -
Pvu1g2383 596 MobiDBLite consensus disorder prediction 188 212 - -
Pvu1g2383 596 PANTHER DELLA PROTEIN RGL1 36 590 IPR030006 GO:0003712|GO:0005634
Pvu1g2383 596 MobiDBLite consensus disorder prediction 1 26 - -
Pvu1g2383 596 Coils Coil 56 76 - -
Pvu1g2383 596 SMART DELLA_2 41 114 - -
Pvu1g2383 596 Pfam Transcriptional regulator DELLA protein N terminal 41 108 IPR021914 -
Pvu1g2383 596 ProSiteProfiles GRAS family profile. 217 590 IPR005202 -
Pvu1g2383 596 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 36 590 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2383 Pvu-Chr1 49176444 49179604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2383 25 591 GRAS Transcription Factor Family AT2G01570 61.979 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pvu1g2383 GRAS 4.6e-138 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2383 1 49176444 49179604 Pvu1g2383 1 49176444 49179604 ECH
Pvu1g2383 1 49176444 49179604 Pvu11g0650 11 5483354 5486607 ECH
Pvu1g2383 1 49176444 49179604 Pvu8g2436 8 54952632 54955300 PCT