Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2381 ATGGCAACTGGAGACTTCATTAATAAATCCCTTTCACTTCCTCCATACCCCGAGATGATTTTGGAGGCGATTGAGGCACTGAATGAAGGGAATGGCTCCAATAAAACGTCAATTTCCAAGTACATAGAATCTAAGTACGGTGTACTGCCTCCGGGCCACAAGGTACTGCTCAATGTGCACCTTGCAAAATTGAGGGACACTGGGTTGCTGGACTTTTGGAAGAATAACTACACCAAGCGTAACCCAAACGCGCCGCCGCGGCGTGGCCGTGGCAGGCCGCCCAAGCCCAAGGAGTTTCTGCCTCCGGGCACTGTCTTGTCACCGCCCAGGCCCAGGGGCCGTCCCCCAAAAGGCCCAAGGGACACGCCAAGGCCACCCAAAGCCTCGGCTGGGAGTGGCAGACCCAGAGGCCGGCCTAGGAAGATGGCCCGGCCCGCTGGAGGTTTTGGCGAAGCATCGGCTTCCCCGTTGAAGCCCAGCGGAAAGCCCAGGGGAAGGCCTCCGAAAGTGAAGCCCGAATTGGTAGAAAATATTGCTTAG 540 0.5667 MATGDFINKSLSLPPYPEMILEAIEALNEGNGSNKTSISKYIESKYGVLPPGHKVLLNVHLAKLRDTGLLDFWKNNYTKRNPNAPPRRGRGRPPKPKEFLPPGTVLSPPRPRGRPPKGPRDTPRPPKASAGSGRPRGRPRKMARPAGGFGEASASPLKPSGKPRGRPPKVKPELVENIA* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2381 179 MobiDBLite consensus disorder prediction 75 179 - -
Pvu1g2381 179 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Pvu1g2381 179 PRINTS High mobility group protein (HMGY) signature 107 119 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Pvu1g2381 179 PRINTS High mobility group protein (HMGY) signature 135 146 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Pvu1g2381 179 PRINTS High mobility group protein (HMGY) signature 150 169 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Pvu1g2381 179 Gene3D - 9 84 IPR036388 -
Pvu1g2381 179 PANTHER HISTONE H1 1 175 - -
Pvu1g2381 179 MobiDBLite consensus disorder prediction 96 113 - -
Pvu1g2381 179 PANTHER HMG-Y-RELATED PROTEIN A 1 175 IPR031059 GO:0003677|GO:0005634
Pvu1g2381 179 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Pvu1g2381 179 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Pvu1g2381 179 SMART AT_hook_2 161 173 IPR017956 GO:0003677
Pvu1g2381 179 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Pvu1g2381 179 CDD H15 14 70 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu1g2381 179 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu1g2381 179 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pvu1g2381 179 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Pvu1g2381 179 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Pvu1g2381 179 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Pvu1g2381 179 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2381 Pvu-Chr1 49154554 49155574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2381 19 86 Single Myb Histone (SMH) Gene Family AT1G49950 44.118 2.48e-06 44.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2381 1 49154554 49155574 Pvu1g2381 1 49154554 49155574 ECH
Pvu1g2381 1 49154554 49155574 Pvu8g2441 8 55006028 55007366 PCT
Pvu8g2437 8 54961092 54962470 Pvu1g2381 1 49154554 49155574 PCT