Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2202 ATGGCATCGATTCAACGTTCGGCGACAAGTTCTGGATCTGAAGCAGGAGATCTGCAAATCGACGAGAGAAAGCGGAAGAGGATGTTGTCGAACCGCGAATCCGCGCGGCGATCGCGGATGAGGAAGCAGAAACAGCTGGAGGATTTGACCGATGAGGTTAGCAGATTGCAAGGCGCGAACAAGAAGCTTGTGGAGAACATCAAGGCCAAGGAAGAAGCATGCGCTGAGACCGAAGCCGGGAACAGTATTTTGAGGGTTCAGACCATGGAATTGACGGAACGATTACGCTTCTTGAACTCTATCCTTGAAATCGCTGAAGAGGTCGGAGGTTTATCCGTTGAGATTCCCGATATTCCAGATCCTCTCCTCAAGCCGTGGCAGATTCCTCATCCGACGCAAGCGATTATGGCCACCGCAAATATGTTTCTGCGTTGA 435 0.5103 MASIQRSATSSGSEAGDLQIDERKRKRMLSNRESARRSRMRKQKQLEDLTDEVSRLQGANKKLVENIKAKEEACAETEAGNSILRVQTMELTERLRFLNSILEIAEEVGGLSVEIPDIPDPLLKPWQIPHPTQAIMATANMFLR* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2202 144 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Pvu1g2202 144 MobiDBLite consensus disorder prediction 1 52 - -
Pvu1g2202 144 MobiDBLite consensus disorder prediction 1 16 - -
Pvu1g2202 144 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 68 IPR004827 GO:0003700|GO:0006355
Pvu1g2202 144 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Pvu1g2202 144 Gene3D - 21 78 - -
Pvu1g2202 144 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 142 - -
Pvu1g2202 144 MobiDBLite consensus disorder prediction 17 52 - -
Pvu1g2202 144 SUPERFAMILY Leucine zipper domain 23 71 IPR046347 GO:0003700|GO:0006355
Pvu1g2202 144 Coils Coil 32 73 - -
Pvu1g2202 144 Pfam bZIP transcription factor 23 76 IPR004827 GO:0003700|GO:0006355
Pvu1g2202 144 CDD bZIP_plant_GBF1 24 75 IPR045314 GO:0003700|GO:0006355
Pvu1g2202 144 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2202 Pvu-Chr1 47631748 47632975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2202 21 142 bZIP Transcription Factor Family AT3G62420 55.738 8.96e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu1g2202 bZIP_1 7.9e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2202 K25786 - gmx:778144 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2202 1 47631748 47632975 Pvu1g2202 1 47631748 47632975 ECH
Pvu1g2202 1 47631748 47632975 Pvu7g2204 7 45324320 45325225 PCT