Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2033 ATGGAGAGAGGGTGGAAGGCTAATAGTGTTGAGATTTCACCGAACTGTCCCAGGTGTAGTTGTTCCAATACCAAGTTCTGCTACTACAATAACTACAGTTCAACTCAACCACGGTACTTTTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGATCCCTCCGCAACGTACCAATTGGTGGTGGCTGCCGCAAAAGTAGAAGGGGTAGATATAATAAGACCTTAAGACAAGCCAATAGCCCAGTTGGGCATTCTGATTTAAGGCCTTCTTCTTCAGTGATGTCTGATGGGCCAAATATTGATATAGCTCAAGTCTATGCAAGTTTTCTCAACGTGAAGCCAGATCAAGTGCAAACATTTTGCTCTCCTTCTCCTGAGTATTCAAGCATAATTAACACTGATTTTGGCCACAGTGCTTTGTCTGAAGAGCACGGTCTTACCGGGCGCTTGCATTTTCATGAACAGCCCACAGAATCCTATTTTAGTGAGGATATCGGAATGTACTTTTGTGGGTTGAACTCTATTCAGAAGCATAAAGAATATAGTAGCAGTCATGATACAACAGTTACAAAAACAAATTTTGAGTTGCCCCCATTACCAGGTGAAGATGCAGAAACCTCACATGGTAATGTGTTGTGGTCCAATTCTGAGATGATGGTAGATCATGGTTTGCAAGCCACCCAATGGCCCCTTTTTGAACCAGAAGCTTATGATGCAGACTTCTTAATGGGTAACTGTTGGAGCCACTTCGATTTGCCAAGGGATGCTTCTTTTTCCACGCCTTGA 786 0.4364 MERGWKANSVEISPNCPRCSCSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRGRYNKTLRQANSPVGHSDLRPSSSVMSDGPNIDIAQVYASFLNVKPDQVQTFCSPSPEYSSIINTDFGHSALSEEHGLTGRLHFHEQPTESYFSEDIGMYFCGLNSIQKHKEYSSSHDTTVTKTNFELPPLPGEDAETSHGNVLWSNSEMMVDHGLQATQWPLFEPEAYDADFLMGNCWSHFDLPRDASFSTP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2033 261 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 257 - -
Pvu1g2033 261 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 257 IPR045174 GO:0003700|GO:0006355
Pvu1g2033 261 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Pvu1g2033 261 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Pvu1g2033 261 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2033 Pvu-Chr1 46235911 46236696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2033 5 256 C2C2-Dof Transcription Factor Family AT3G52440 40.441 2.19e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu1g2033 zf-Dof 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2033 - - gmx:778109 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2033 1 46235911 46236696 Pvu1g2033 1 46235911 46236696 ECH
Pvu1g2033 1 46235911 46236696 Pvu7g2756 7 50584990 50585817 PCT