Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1105 ATGTCTGAGACAAAGAAGGATCCGGGTATCAGGCTATTTGGCCGGAAGATTCCGGTGCCGGAATGTCAGATTCCGGCCAACTCTGGACCCACGGATGCTTGCAGCAGCATAAAAAAGGCAGAACTGGAAATGCCTAGTGAATGTGGAGAAAACTCTGAAAAACAAGAAAAGTTTTGTGATTCAAGGGATAGTAAACAAGAGTTCCAACATAAAGTGAAGGAAAATGAGCCAATAGTAAACCCCAAACCAGTGGAAGATAATACGGAGAATGGTGATTCAGACCAAGATAAAGTCTTGAAGAAACCAGACAAGATTCTTCAGTGTCCACGATGTAACAGTTTGGACACCAAGTTTTGTTATTTTAACAACTACAACGTTAACCAACCCCGGCATTTCTGCAAGAACTGTCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGAGCTGGGAGACGGAAGAATAAACACCTAGCGTCTCAGTACCGACACATTATGGTCTCTAATGGAATTCCTACCTCCAGACTACAAACTGAGGACACATCTGGTTTCCAACATGTCACAAGTCTTGAATCCTCAGTTCCTTTCAGGTCTTCAGCAGATAACAACAGCACTGTTTTGAAATTTGGGCCAGATACCCCTCTTTGTGAATCAATGGATTCAATGCTTAATCTTAGAGACGAGAGAAGATGTGTTGATGCAAGTTCTATAAACCGTGTAGAGTATGCTGGGGAACCATCTTTATGTGGATCTTCTGTGACGAATAATGGTACTCAAGGAAATGAATTATCAGAACATAAGACATCAAATTGGTTACAATGTTACCCTGTTCCTCCATGGGTATTGCCTTATCCAGGTTGGAATAATGTGAATTCCATGGAAGTAGTTCATCAGTCTTCAGCACCAATGTGTAGTCCATACAACACTGGTCCTGCTGCAATGCAATGGTGTCCCACAGCAATGGTGGCAATTCCTGGCATGTGCCCACCAAGCATTCCTTTGCAACTTGTACCACCATCATGCTGGAGTGGAACACCACTTTGGAATGCTGGAACTGGGGCAGTGTCCATAGGATCCAATGCTTGCCTTTCGCCATCTTCCTCCACGAGTAACAGTTGCTGCTCGGGCAATGGCTCCCCAACCCTTGGCAAACACGCTAGAGATACGGTTTTTGCTGATGAAGAGAAATCAGAGAAGTGTGTTTTGGTTCCAAAGACCATCAGAATTGATGCCTCAAAAAGTCCTATAAGGGCTGCATTAACCATCCAGCATGATCAACAGAAATCTCTATCAAATGGTGATATTTTGAAGAAAATTGAACCAAAAGAAGGCAAAGATCGCATATTGGGTGCCTCTCAAATCTTGGAAGCCAATCCAGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGAGCATTTAG 1428 0.4349 MSETKKDPGIRLFGRKIPVPECQIPANSGPTDACSSIKKAELEMPSECGENSEKQEKFCDSRDSKQEFQHKVKENEPIVNPKPVEDNTENGDSDQDKVLKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIMVSNGIPTSRLQTEDTSGFQHVTSLESSVPFRSSADNNSTVLKFGPDTPLCESMDSMLNLRDERRCVDASSINRVEYAGEPSLCGSSVTNNGTQGNELSEHKTSNWLQCYPVPPWVLPYPGWNNVNSMEVVHQSSAPMCSPYNTGPAAMQWCPTAMVAIPGMCPPSIPLQLVPPSCWSGTPLWNAGTGAVSIGSNACLSPSSSTSNSCCSGNGSPTLGKHARDTVFADEEKSEKCVLVPKTIRIDASKSPIRAALTIQHDQQKSLSNGDILKKIEPKEGKDRILGASQILEANPAAISRAHAFQESI* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1105 475 ProSitePatterns Zinc finger Dof-type signature. 108 144 IPR003851 GO:0003677|GO:0006355
Pvu1g1105 475 MobiDBLite consensus disorder prediction 45 80 - -
Pvu1g1105 475 MobiDBLite consensus disorder prediction 45 98 - -
Pvu1g1105 475 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 474 - -
Pvu1g1105 475 PANTHER CYCLIC DOF FACTOR 2 1 474 IPR045174 GO:0003700|GO:0006355
Pvu1g1105 475 Pfam Dof domain, zinc finger 103 160 IPR003851 GO:0003677|GO:0006355
Pvu1g1105 475 ProSiteProfiles Zinc finger Dof-type profile. 106 160 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1105 Pvu-Chr1 27221418 27224141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1105 7 474 C2C2-Dof Transcription Factor Family AT5G39660 35.075 8.39e-64 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu1g1105 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1105 - - gmx:100813787 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1105 1 27221418 27224141 Pvu1g1105 1 27221418 27224141 ECH
Pvu1g1105 1 27221418 27224141 Pvu4g0583 4 6941656 6944670 PCT