Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1073 ATGGAACACCATTTTGGTCAAGACGCTGCACCTGCATCTGGGTCCTTTGATAAGACTAGGGTTTTGAATGTGAAGCCATTAAGAACACTTGTTCCTGTGTTCCCTTCACCATCTAATCCTGCTTCATCTTCAGCTCCACAAGGGGGTGCCCCATTTGTCTGTGTTTCACCTTCTGGTCCTTTCCCTTCTGGGGTTGCACCCTTCTATCCATTCTTCATCTCCCCTGAATCCCAGAGGCTCTCTGAGCAGAATGCACAAACGCCCACTGGTCAACGTGTGCCTGCTGCTCCGATTTCTACTGCTCCGATTTCTACTGCAGTTCCAATTAATTCATTTCGGACGCCAACTGGAGCTACAAATGGTGATGTGGGCACATCGCGAAGAAATACCCGAAGTTGGGGACAGGTCACAGAGGAAGATGGCTACAGTAATGTTGTGATAGAGGAAGTTGATGCAGATGCAAGAACTAGGAGTGGAAGGTCAAAGCGCAAGTTGCAGAAGAAGATAAAGGGACCGCAGAGTGGTGTTTCTGGGGATGTTGATCCAGATGCAGTGGCTGCTGATATTCTCAAGTCACTTAACCCATTGATTTTCGAGGTATTAAATCAACCGGAAGGTAGCAGGGACTCAGCTGCATATACACTCATGATATATGAAGTAATGCGAAGAAAGCTTGGACAAATTGAGGATTCAAATAGGGCCGCTAACTCTGGAGCAAAACGACCTGATTTGAAGGCAGGTGCACTTATGATGAATAAAGGGATTCGGACCAACAGCAAGAAACATATTGGATCTGTGTCTGGTGTTGAGATTGGGGATATTTTCTTTTTCAGATTTGAATTGTGCTTAGTGGGTTTACATGCACCTTCTATGGCTGGAATTGATTATATCGGTACCAAAACCAGTCAAGAGGAAGAGCCCTTAGCTGTAAGTATTGTCTCATCTGGAGGGTATGAAGATGATGTGGAGGATGGGGATGTGCTGATTTACAGTGGCCAAGGTGGGGTTAACCGTGACAAGGGAGCAAGTGATCAAAAGCTTGAAAGGGGAAATCTTGCTTTGGATAATAGTGCCCATAGAGGTAACGAAGTGAGGGTAATTAGGGGTTTGAAGGATTTGCATCATCCGACTGGGAAGGTATATGTCTATGATGGCCTTTACAAGATTCAAGATTCCTGGGTGGACAAAGCAAAATCTGGTTTCAATGTATTCAAGCATAAATTAGGAAGGTTGCCTGGACAGCCTCCAGCATATATGATCTGGAAATCCATTCAACAATGGACTGAGAAATCTGCTTCAAGAGCTGGGGTTATATTGCCTGATCTTACTTCTGGGGCTGAAAAAGTACCTGTTTGTCTTGTGAATGATGTTGATGCTGAGAAGGGCCCTGCATATTTCACTTACCTCCCAAATCTTAAAAATTTGAGGCCATCTCCTCCGTTGGAATCTTCTACTGGATGTTCTTGTGTTGGTGGATGCCAACCTAACAATTCTAACTGTCCTTGTGTTCAAACGAATGGTGGCTATTTACCATATTCTTCAGCCTCGTTAATTGCAGACCTAAAATCTGTTATATATGAGTGTGGTCCTTCTTGTCAATGTCCTTCTAATTGCCGAAACCGGGTTTCTCAAGGTGGCTTGAAGTTTCGTTTGGAGGTTTATAAAACCAAGAATAAAGGATGGGCTCTTAGATCATGGGATGCTATTCGAGCAGGATCTTTCATATGTGAGTATGCAGGGGAAGTCATAGATAGTGCCAGAGTGGAGGAGGAGCTTGGTGGTGAAAATCCTGACGATTACATTTTTGATTCTACTCGCATTTATCAGCAACTGGAAGTTTTTCCCGCTGACACTGAAGCTCCAAAAATCCCATCCCCTCTATATATATCAGCAATATATGAAGGGAATGTTGCTCGGTTTATGAACCACAGCTGCTCTCCAAATGTATTATGGCGTCCAGTCATACATGATAATAAGAATGTGTCAGATCTCCACATTGCTTTCTATGCAATTAGACATATCCCTCCTATGATGGAGTTAACCTATGATTATGGGACGGTTCTTCCTCTCAAAGCAGGTCACAGGAAAAAGAAATGCTTATGTGAATCTGTGAAATGCAGGGGTTACTTTTGTTAA 2136 0.4363 MEHHFGQDAAPASGSFDKTRVLNVKPLRTLVPVFPSPSNPASSSAPQGGAPFVCVSPSGPFPSGVAPFYPFFISPESQRLSEQNAQTPTGQRVPAAPISTAPISTAVPINSFRTPTGATNGDVGTSRRNTRSWGQVTEEDGYSNVVIEEVDADARTRSGRSKRKLQKKIKGPQSGVSGDVDPDAVAADILKSLNPLIFEVLNQPEGSRDSAAYTLMIYEVMRRKLGQIEDSNRAANSGAKRPDLKAGALMMNKGIRTNSKKHIGSVSGVEIGDIFFFRFELCLVGLHAPSMAGIDYIGTKTSQEEEPLAVSIVSSGGYEDDVEDGDVLIYSGQGGVNRDKGASDQKLERGNLALDNSAHRGNEVRVIRGLKDLHHPTGKVYVYDGLYKIQDSWVDKAKSGFNVFKHKLGRLPGQPPAYMIWKSIQQWTEKSASRAGVILPDLTSGAEKVPVCLVNDVDAEKGPAYFTYLPNLKNLRPSPPLESSTGCSCVGGCQPNNSNCPCVQTNGGYLPYSSASLIADLKSVIYECGPSCQCPSNCRNRVSQGGLKFRLEVYKTKNKGWALRSWDAIRAGSFICEYAGEVIDSARVEEELGGENPDDYIFDSTRIYQQLEVFPADTEAPKIPSPLYISAIYEGNVARFMNHSCSPNVLWRPVIHDNKNVSDLHIAFYAIRHIPPMMELTYDYGTVLPLKAGHRKKKCLCESVKCRGYFC* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1073 711 MobiDBLite consensus disorder prediction 155 180 - -
Pvu1g1073 711 Gene3D - 247 431 IPR036987 -
Pvu1g1073 711 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 12 710 - -
Pvu1g1073 711 ProSiteProfiles Pre-SET domain profile. 485 546 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu1g1073 711 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 12 710 - -
Pvu1g1073 711 SUPERFAMILY SET domain 425 691 IPR046341 -
Pvu1g1073 711 Pfam SAD/SRA domain 262 414 IPR003105 -
Pvu1g1073 711 ProSiteProfiles Post-SET domain profile. 695 711 IPR003616 -
Pvu1g1073 711 SUPERFAMILY PUA domain-like 246 429 IPR015947 -
Pvu1g1073 711 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 125 710 IPR025794 GO:0016571
Pvu1g1073 711 ProSiteProfiles SET domain profile. 549 685 IPR001214 GO:0005515
Pvu1g1073 711 MobiDBLite consensus disorder prediction 108 130 - -
Pvu1g1073 711 Gene3D SET domain 432 710 IPR046341 -
Pvu1g1073 711 SMART preset_2 439 533 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu1g1073 711 SMART G9a_1 259 414 IPR003105 -
Pvu1g1073 711 SMART set_7 549 691 IPR001214 GO:0005515
Pvu1g1073 711 Pfam Pre-SET motif 443 541 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu1g1073 711 ProSiteProfiles YDG domain profile. 264 410 IPR003105 -
Pvu1g1073 711 Pfam SET domain 560 685 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1073 Pvu-Chr1 24430819 24433790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1073 6 710 Su(var)3-9 homologs AT1G73100 46.281 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu1g1073 SAD_SRA 1.4e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1073 K24405 - gmx:100786650 1226.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1073 1 24430819 24433790 Pvu1g1073 1 24430819 24433790 ECH