Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0834 AAAAGTATTGGATTCATTCACATACTCTTGCACAGTTTTCTAACATTCCCCTTTTCTGCTTCTTCTGCAACGAGTTCTCAACTAAAATACAAAACCTACCATCATTTCTCCTTCTTTCAACTTCATTTCACTACACCTACCTTCATCCTCTATTCATCTTCATCTTCATCCATATCCAACTCCATGGACACAGCTCAGTGGCCACAGGAGATGGTGGTGAAACCAATAGAAGATATAGTAGTAGTGACAAATACATGTCCAAAGGTTGCAGGTGCGGTGGAAAGGAAGCCAAGGCCACAGAAAGAACAATCTCTTAACTGTCCAAGGTGTCATTCCATTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCTCGCTATTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGTTCCAGGAAGAACAAGAGATCTACTTTTTGTTCCACACCTCATAGAAATTCACCCGACAAGAAGCTTTCTGATCTGGTAATCACACCTCCATTGTCACACTCTCAAAACCCTAAGAATAATATTATTCATCAAGGCCAAGATCTCAATCTGGCTTTCCCAGCCACCACCTCAGATTTCAGAAATATCTCTGAATTGGTTCAACAAAACAACAACAACAATAGTAGCAACAACATGTCGGCTTCGGCTTCTTCTCCATCTTCAACTACTACCACTACCACACCTACAACTTCTCACCTTTCTGCATTGGAGCTTCTTACTGGGATCACTTCAACTTCCACTGGCTTGAATTCTTTCATGCCTGTTCCCGTTCCAGCCGATCCAAATTCTGTCTACACTTGTGGCTTTCCTCTGCAAAATTTCAAGCCAGCCTTGAACTTCTCTTTAGATGGGATTGGACACGGGTACGCGAGTCTGCATAATGTTCAAAGTGGGAGGCTCTTGTTTCCATTTGAGGACTTAAAACAGGTTTCCACTGCTACCACAATGGATCAGAAGCAACAAGGAGATTCAACTGGGTATTGGACTGGAATGTTTGGCGGAGGATCATGA 1068 0.4307 KSIGFIHILLHSFLTFPFSASSATSSQLKYKTYHHFSFFQLHFTTPTFILYSSSSSSISNSMDTAQWPQEMVVKPIEDIVVVTNTCPKVAGAVERKPRPQKEQSLNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSTFCSTPHRNSPDKKLSDLVITPPLSHSQNPKNNIIHQGQDLNLAFPATTSDFRNISELVQQNNNNNSSNNMSASASSPSSTTTTTTPTTSHLSALELLTGITSTSTGLNSFMPVPVPADPNSVYTCGFPLQNFKPALNFSLDGIGHGYASLHNVQSGRLLFPFEDLKQVSTATTMDQKQQGDSTGYWTGMFGGGS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0834 355 MobiDBLite consensus disorder prediction 147 176 - -
Pvu1g0834 355 Pfam Dof domain, zinc finger 103 159 IPR003851 GO:0003677|GO:0006355
Pvu1g0834 355 ProSitePatterns Zinc finger Dof-type signature. 107 143 IPR003851 GO:0003677|GO:0006355
Pvu1g0834 355 ProSiteProfiles Zinc finger Dof-type profile. 105 159 IPR003851 GO:0003677|GO:0006355
Pvu1g0834 355 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 62 352 - -
Pvu1g0834 355 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 62 352 IPR045174 GO:0003700|GO:0006355
Pvu1g0834 355 MobiDBLite consensus disorder prediction 221 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0834 Pvu-Chr1 13241653 13243692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0834 62 355 C2C2-Dof Transcription Factor Family AT4G24060 43.380 1.33e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu1g0834 zf-Dof 6.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0834 - - pvu:PHAVU_001G080800g 657.521