Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0638 ATGGACTTAGATCAGTGGGCACAGGGCATTGGAGGAGGTAAAGCTATGGAAGGTTCAAAGCCTCCAATTTTGGAGAAAAGGGCAAGGCCACAGAAAGATGAAGCTTTGAACTGCCCAAGGTGCAATTCAACAAATACTAAATTCTGCTATTACAACAACTATAGCCTCTCTCAACCAAGGTACTTTTGCAAGAGCTGTAGAAGGTATTGGACTGAGGGAGGATCTTTGAGAAATGTTCCAGTGGGAGGAGACTCAAGAAAGAGCAAGAGATCACCAACTTCTGCATCTTCATTTCCTGATCTCACAACACAACCCAATTTCCCTCACTCTCCTTCAAACCCTAAGATCCATCAAGCCCAAGATCTTAACTTAGCATATCCTCCAGTTGAGAACCACACCAGCATATCTAAATTCATTGAGGTTCCATACAACACTGAAGACAACACTCATCAGCACAACCTTCAAAATCTCACTTCTTCTTACTTTTCAGCAATGGAGCTTCTCAAGACTGAGATCACTTCATCAAAGGGCTTAACCTCTTTCATACCCATGTCAGTTTCAGATTCCAGAACAATGTATAACTCAACTGGGTTTCCTTTGCTGGACTTCAAACCTGGGCTCAGCTTCAGTTTAGAGGGGCTTGAAAATGGTTATCATGATGGTCTCCAAGGGATTCAAGAGGGTGAAGGGACAAGGATCTTGTTTCCTGTCGGGGATTTGAAGTCACAGCTGGTGACAAAGAGTGCTGAGTTTGGGCCAAATAGAAGTCAAGGGGATTCAACAGGGTATTGGAATCATGGTAGATATTAG 810 0.4333 MDLDQWAQGIGGGKAMEGSKPPILEKRARPQKDEALNCPRCNSTNTKFCYYNNYSLSQPRYFCKSCRRYWTEGGSLRNVPVGGDSRKSKRSPTSASSFPDLTTQPNFPHSPSNPKIHQAQDLNLAYPPVENHTSISKFIEVPYNTEDNTHQHNLQNLTSSYFSAMELLKTEITSSKGLTSFIPMSVSDSRTMYNSTGFPLLDFKPGLSFSLEGLENGYHDGLQGIQEGEGTRILFPVGDLKSQLVTKSAEFGPNRSQGDSTGYWNHGRY* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0638 269 MobiDBLite consensus disorder prediction 87 116 - -
Pvu1g0638 269 MobiDBLite consensus disorder prediction 77 116 - -
Pvu1g0638 269 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 23 267 - -
Pvu1g0638 269 MobiDBLite consensus disorder prediction 248 269 - -
Pvu1g0638 269 ProSiteProfiles Zinc finger Dof-type profile. 36 90 IPR003851 GO:0003677|GO:0006355
Pvu1g0638 269 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 267 IPR045174 GO:0003700|GO:0006355
Pvu1g0638 269 Pfam Dof domain, zinc finger 34 90 IPR003851 GO:0003677|GO:0006355
Pvu1g0638 269 MobiDBLite consensus disorder prediction 248 263 - -
Pvu1g0638 269 ProSitePatterns Zinc finger Dof-type signature. 38 74 IPR003851 GO:0003677|GO:0006355
Pvu1g0638 269 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0638 Pvu-Chr1 7655746 7657228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0638 26 265 C2C2-Dof Transcription Factor Family AT3G61850 44.444 8.64e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu1g0638 zf-Dof 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0638 - - lang:109326143 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0638 1 7655746 7657228 Pvu1g0638 1 7655746 7657228 ECH
Pvu1g0638 1 7655746 7657228 Pvu9g1410 9 20017224 20018880 PCT