Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0278 ATGGGAACCGAGAGCTACACTTACCTAGGACGCAATTTCAGCCAACTCAGCATCAACGACGCTTCCTCTTCCTCCGCCTTCAGCGACTGCAACAGTGACAGATCTGGCGAATTCGCTACCGCTTCTTCGCAAACGCGCCGCTTCCTCATCACCTGCGCCACCGAAAACTCCGACGACTTGATCCGTCAACTCGTCGCCGATCTCCACTCCGCCTCACTCGACGATCAGAAACAAGCCGCCATGGAAATCAGATTGCTCGCCAAGAACAAGCCCGAGAATCGACTCAAAATCGCCAAAGCCGGCGCAATCAAACCGCTGATTTCACTCATTTCCTCGTCGGACCTCCAGCTCCAGGAATACGGCGTCACCGCGATTCTGAATCTCTCGCTCTGCGATGAGAACAAGGAGGCCATCGCATCCAGCGGCGCGATTAAGCCGCTGGTTCGCGCGCTGAGCACGGGAACCGCGACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTGCGGCTGTCGCAGGTGGAGGAGAACAAGGCGGCGATTGGTCGTTCCGGTGCGATTCCGGCGCTGGTGAGCCTTCTGGAGAGCGGCGGAATCCGCGCGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCACGGTGAAGGAGAACAAGCTGAGGGCGGTGAAGGCGGGGATCATGAAGGTGCTGGTGGAGCTGATGGCGGACTTCGAGTCGAACATGGTGGACAAGTCCGCGTACGTGGTCAGCGTGCTGGTGACGGTGCCGGAAGCAAGAGCGGCGCTGGTGGAGGAAGGCGGCGTGCCGGTGCTGGTTGAGATCGTTGAGGTCGGAACACAGAGGCAGAAGGAAATCGCGGTTGTTATTCTGTTGCAGGTGTGCGAAGATAGCGTGACGTATCGCTCTATGGTGGCTCGCGAAGGTGCGATTCCTCCTTTGGTGGCTTTGTCTCAGTCCGGCACCAATCGCGCCAAGCAAAAGGCGGAGAAATTAATTGAACTTCTGCGGCAACCGAGATCCAGCAACGGCGGTGGTCGTGCGTCGGAACTGGCGGTGTAA 1056 0.5919 MGTESYTYLGRNFSQLSINDASSSSAFSDCNSDRSGEFATASSQTRRFLITCATENSDDLIRQLVADLHSASLDDQKQAAMEIRLLAKNKPENRLKIAKAGAIKPLISLISSSDLQLQEYGVTAILNLSLCDENKEAIASSGAIKPLVRALSTGTATAKENAACALLRLSQVEENKAAIGRSGAIPALVSLLESGGIRAKKDASTALYSLCTVKENKLRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVTVPEARAALVEEGGVPVLVEIVEVGTQRQKEIAVVILLQVCEDSVTYRSMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSSNGGGRASELAV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0278 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 142 184 IPR000225 GO:0005515
Pvu1g0278 351 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Pvu1g0278 351 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
Pvu1g0278 351 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Pvu1g0278 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Pvu1g0278 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 225 IPR000225 GO:0005515
Pvu1g0278 351 PANTHER U BOX DOMAIN-CONTAINING 5 343 - -
Pvu1g0278 351 SMART arm_5 131 171 IPR000225 GO:0005515
Pvu1g0278 351 SMART arm_5 213 253 IPR000225 GO:0005515
Pvu1g0278 351 SMART arm_5 254 294 IPR000225 GO:0005515
Pvu1g0278 351 SMART arm_5 172 212 IPR000225 GO:0005515
Pvu1g0278 351 SMART arm_5 90 130 IPR000225 GO:0005515
Pvu1g0278 351 SUPERFAMILY ARM repeat 58 331 IPR016024 -
Pvu1g0278 351 Gene3D - 199 334 IPR011989 -
Pvu1g0278 351 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 343 - -
Pvu1g0278 351 Gene3D - 32 198 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0278 Pvu-Chr1 2528965 2531058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0278 42 343 U-box Gene Family AT2G23140 49.338 4.52e-88 276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0278 1 2528965 2531058 Pvu9g0732 9 11912427 11914363 PCT