Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0273 ATGGAACCTGTTGGTGCCTTCCCTGATGGAGAATGGGATTGCTTTCGTGGAATGTTTGCCAGTGAGGATCATTTCACATCGGAGTTTCCTCTTCTGCTTGGTGGAGGCGATGAACTGAACATTGTGACAGAGCAAGCCAATTTTTGTGGTGCTCCTGAAGCTGGTGAAAATGAGCTGATGTTTTATTCTTTAGATGCTCATAACTCAAATTCTTCACAGTATATTTCTCAGGAAAGTAGCTATAGTAATAGTAGCAATTGTAGTGGTGATGACACTGTCTTCATTGCCAATCCGGGTAGCTCAAACTATTATTTTAGTTACCCTGATCATATGTCACCAAATAATGCATGTGTATATTCCTTGGATGAGAAACATTTTGCCCCTTTTGCTCCATCGCTTGCTAACATTGCAACTGAAGAGAGTGTGAAGCTGTATGAAGATTTGGCAAGTGACGGATTGGAGAATTCTGAGTGCAATCAAATGGAACCTATTGTTTTTCCCACCAAGAGGAAGAATGATGTGCCTGCTGATGGTAAAATCAACAACAGATCAGAGAATCACAAGAAAAAACCTCGTGTTTCAAAAGATGTGCAAGGATGTATGAAGAACAAATGGTCCAAGAAGAATCAGAAAAATGACAGCAATAGGGAAGATGCAGAAGAGACTAATGCAGGATCAGATGGACAAAGCTCAAGTAGTAACATGTCAGAGGATGATAACAAGGAAAATGTTGGAGGAGCTACTTCAGAATCTAAATCTGTTCTCAACTCAAATGGAAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCCCAGAGCCTATATGCAAGGAAAAGAAGAGAGAGAATAAATGAACGATTAAGAATCCTACAGAATCTTGTCCCTAATGGAACCAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTCAATTATGTGAAATTTTTGCAGCTACAAATCAAGCTTTTAAGCTCAGATGATCTATGGATGTATGCTCCACTTGCTTATAATGGGCTTGACATTGGACTCAATCTAACATGA 1041 0.3977 MEPVGAFPDGEWDCFRGMFASEDHFTSEFPLLLGGGDELNIVTEQANFCGAPEAGENELMFYSLDAHNSNSSQYISQESSYSNSSNCSGDDTVFIANPGSSNYYFSYPDHMSPNNACVYSLDEKHFAPFAPSLANIATEESVKLYEDLASDGLENSECNQMEPIVFPTKRKNDVPADGKINNRSENHKKKPRVSKDVQGCMKNKWSKKNQKNDSNREDAEETNAGSDGQSSSSNMSEDDNKENVGGATSESKSVLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLNLT* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0273 346 CDD bHLH_AtIND_like 268 330 - -
Pvu1g0273 346 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 345 - -
Pvu1g0273 346 Pfam Helix-loop-helix DNA-binding domain 277 317 IPR011598 GO:0046983
Pvu1g0273 346 SMART finulus 273 322 IPR011598 GO:0046983
Pvu1g0273 346 MobiDBLite consensus disorder prediction 162 279 - -
Pvu1g0273 346 Gene3D - 269 325 IPR036638 GO:0046983
Pvu1g0273 346 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 345 - -
Pvu1g0273 346 MobiDBLite consensus disorder prediction 224 271 - -
Pvu1g0273 346 MobiDBLite consensus disorder prediction 172 197 - -
Pvu1g0273 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 331 IPR036638 GO:0046983
Pvu1g0273 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 316 IPR011598 GO:0046983
Pvu1g0273 346 MobiDBLite consensus disorder prediction 206 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0273 Pvu-Chr1 2457056 2458767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0273 245 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 84.615 9.72e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g0273 HLH 1.1e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0273 1 2457056 2458767 Pvu1g0273 1 2457056 2458767 ECH