Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0272 ATGGCTTTGGAAGCTCTCAACTCCCCCACAACAACTGTTCCATCTTTCCCCTTTGACCACCCAACCATTCCATGGGCAAAACGCAAGCGTTCCAAGCGTTCCCGCGACCACCCTTCCGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCCCGCGGCACCACCACCACCACCACCCCAACCCCAGATCCTTCCTCCAAGCTCACCTACAAATGCTCCGTCTGCCACAAAACCTTCCCCTCCTACCAGGCTCTCGGCGGACACAAGGCCAGCCACCGGAAACTCGCGCTCGCCGACGACCACCCCACCTCCTCCGCCGCCACTTCTACCAGCATCGCCACCGCCTCCGGCAGGGCCCACGAGTGCTCCATCTGTCACAAGTCCTTCCCCACAGGACAGGCCCTCGGCGGACACAAACGTTGTCACTACGAAGGTAACAACAATAATAACAACAACAACGGAAACAGCACGAGTGTTGTAACCGCCTCGGAAGGTGTGGGGTCCACTCACAGCCACCACCGTGATTTTGATCTGAATATCCCTGCTTTTCCCGATTTAACAACGAAGCCGGGAGAAGACGAGGTTGAGAGCCCTCACCCCGTGATGAAGAAACCGCGTCTCTTCGTGGTTCCCAAGATCGAAATTCCTCATTTTCTCTGA 663 0.5686 MALEALNSPTTTVPSFPFDHPTIPWAKRKRSKRSRDHPSEEEYLALCLIMLARGTTTTTTPTPDPSSKLTYKCSVCHKTFPSYQALGGHKASHRKLALADDHPTSSAATSTSIATASGRAHECSICHKSFPTGQALGGHKRCHYEGNNNNNNNNGNSTSVVTASEGVGSTHSHHRDFDLNIPAFPDLTTKPGEDEVESPHPVMKKPRLFVVPKIEIPHFL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0272 220 MobiDBLite consensus disorder prediction 163 183 - -
Pvu1g0272 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Pvu1g0272 220 SMART c2h2final6 121 143 IPR013087 -
Pvu1g0272 220 SMART c2h2final6 71 93 IPR013087 -
Pvu1g0272 220 MobiDBLite consensus disorder prediction 1 38 - -
Pvu1g0272 220 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Pvu1g0272 220 PANTHER ZINC FINGER PROTEIN ZAT10 1 211 - -
Pvu1g0272 220 SUPERFAMILY beta-beta-alpha zinc fingers 70 143 IPR036236 -
Pvu1g0272 220 Pfam C2H2-type zinc finger 120 144 - -
Pvu1g0272 220 Pfam C2H2-type zinc finger 71 95 - -
Pvu1g0272 220 Gene3D Classic Zinc Finger 69 143 - -
Pvu1g0272 220 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 211 IPR044653 GO:0003700
Pvu1g0272 220 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Pvu1g0272 220 MobiDBLite consensus disorder prediction 1 17 - -
Pvu1g0272 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0272 Pvu-Chr1 2449741 2450695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0272 1 216 C2H2 Transcription Factor Family AT1G27730 53.390 5.96e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g0272 zf-C2H2_6 8.3e-13 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0272 1 2449741 2450695 Pvu9g0728 9 11852677 11853726 PCT