Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0257 ATGGCATCGGGAAGCAGGGATATGGATCGGGTCAAGGGCCCGTGGAGCCCGGAGGAGGACGAGGCGCTGCAGAGGCTGGTGCAGGCCCTTGGGCCCAGGAACTGGACGGTGATAAGCAAGTCTATTCCGGGTCGATCCGGGAAATCGTGCCGGCTACGGTGGTGCAACCAGCTCTCGCCGGAGGTGGAGCACCGCCCGTTCTCGCCGGAAGAGGACGATGCTATTGTCAGGGCGCACGGTAGGTTCGGTAACAAGTGGGCCACCATAGCACGTTTACTCAACGGCCGCACCGATAACGCCGTCAAAAACCACTGGAACTCCACTCTCAAGAGAAAATGCTCCGCCGTTAGTCTCGATGTAACCGATCGTCCACCGCTTAAAAGATCCGCCAGCGTCGGCGCGGGTTATTTAAACCCGAGCAGCCCATCCGGGTCTGAGTTAAGCGATCCGGGCCAGCCCGCTCTGTCGACTCCTTCCGCCTCTGCCCGTTGCAGGCCCAATCTCATGGAAACCGCTTCTTCCCCCTCCGATCCAGCAACGTCACTGAGTTTGTGTCTCCCTGGATTCGGCTCCGAGCCTAGCCTTGTTGCTGCACCGCGGCCGGCGTCATCGCCGCCGCCAGTATCTCCGCCGCCTCCCCCTCCAGCGGCGGTTGAGGAGCGTGGGAAGCAATTGTTCAACGCGGAGTTTTTGAGGGTGATGCAAGAGATGATAAGGAAGGAAGTGAGGAGTTACATGTCAGGGATGGAGCTGAAGAATGGATTGAGAATACAAACGGAAGCCATTGGAAACGCGGTGGTGAAGCGCATGGGAATCAGCAACATCGAGTGA 831 0.5909 MASGSRDMDRVKGPWSPEEDEALQRLVQALGPRNWTVISKSIPGRSGKSCRLRWCNQLSPEVEHRPFSPEEDDAIVRAHGRFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSAVSLDVTDRPPLKRSASVGAGYLNPSSPSGSELSDPGQPALSTPSASARCRPNLMETASSPSDPATSLSLCLPGFGSEPSLVAAPRPASSPPPVSPPPPPPAAVEERGKQLFNAEFLRVMQEMIRKEVRSYMSGMELKNGLRIQTEAIGNAVVKRMGISNIE* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0257 276 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Pvu1g0257 276 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Pvu1g0257 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Pvu1g0257 276 MobiDBLite consensus disorder prediction 134 181 - -
Pvu1g0257 276 Gene3D - 65 123 - -
Pvu1g0257 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Pvu1g0257 276 MobiDBLite consensus disorder prediction 199 218 - -
Pvu1g0257 276 CDD SANT 14 56 IPR001005 -
Pvu1g0257 276 PANTHER MYB PROTEIN-RELATED 8 246 - -
Pvu1g0257 276 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Pvu1g0257 276 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 8 246 - -
Pvu1g0257 276 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Pvu1g0257 276 SMART sant 63 111 IPR001005 -
Pvu1g0257 276 SMART sant 11 60 IPR001005 -
Pvu1g0257 276 Gene3D - 11 63 - -
Pvu1g0257 276 MobiDBLite consensus disorder prediction 124 218 - -
Pvu1g0257 276 CDD SANT 66 109 IPR001005 -
Pvu1g0257 276 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0257 Pvu-Chr1 2276980 2278706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0257 6 253 MYB Transcription Factor Family AT4G37260 49.819 1.41e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g0257 Myb_DNA-binding 5.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0257 1 2276980 2278706 Pvu2g0153 2 1692701 1694639 ECH
Pvu1g0257 1 2276980 2278706 Pvu3g2472 3 46311343 46313013 ECH
Pvu1g0257 1 2276980 2278706 Pvu1g0257 1 2276980 2278706 ECH
Pvu1g0257 1 2276980 2278706 Pvu9g0700 9 11618726 11620806 PCT