Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0254 ATGTCTCACCATTACCCAAAACTCCTTCTAGACACCCTACACTGCTTAGAAGACCACATTCACTGGGAGGAAGAAAAACAGAGAGAAGAAGATGATGATTACATCAGCACCACACCAGAACCAAACTTCTCCGATGTGGTACTCTTCGAACAAGACCTCTTCTGGGACACCCACGAGCTATCTTCTCTTCTCGCCAAAGAAAACCTTAACAACCCTTCCATCTCTCTCCTAAACAACCCTTCTTTGGCTTCTTCACGCGGAGAAGCTGTGGAGTGGATTCTCAAAGTGAATCTCCACTATTCCTTTTCTACCCTCACAGCACTTCTCGCAGTGAACTACCTCGACAGGTTCCTCTTCACCTTCAGATTCCAGAACGACAAACCATGGCTCACGCAACTCGTTGCAGTCGCGTGTCTCTCTCTTGCAGCCAAAGTTGAAGAGACTCATGTGCCCCTTTTCGTCGACCTTCAAGTGGGGGGCAGTAAACACCTGTTCGAAGCGAAAACGGTTAAGAGAATGGAAATCTTGGTCCTTTCCACGCTTGGATGGAAGATGAACCCAGTAACACCTCTCTCGTTTCTCGATTACATCACCAGAAAACTTGGCTTAAAGGGTCATCTGGGCTTGGAGTTTCTCAGAAGGTGTGAGACCGTTCTTCTCTCTGTTTTTGCAGACTCAAGATTCATGAGTTATCTTCCTTCTGTGCTGGCAACGGCCACGATGATGCGCGTGGTGAGTGTTGTGGAGCCTGGTTTGGGTGAGGAATACCAAGATCAGGTCCTGGGTATTCTCGGAATCGACAAGGAAAAGGTGAAAGAATGCTACAGGGTGATAATGGAGGTTGTGACAGGGAAGAACGAAGAAGGTAAACGAGGGAATTTGAAGAAACGGAAGTTTGAGTGCATTCAGTGTAGCCGAAACGACGTGATGGAAGGGTCGTTTAGCTGTGATAGTTCGTGTGATTCATTGAAGAAAAGTAGGAGCCAAGAACAGCTTCTATTGAAGCATTCAAACTCAGATTTTCTCACCATTCCTCGCTAG 1041 0.4688 MSHHYPKLLLDTLHCLEDHIHWEEEKQREEDDDYISTTPEPNFSDVVLFEQDLFWDTHELSSLLAKENLNNPSISLLNNPSLASSRGEAVEWILKVNLHYSFSTLTALLAVNYLDRFLFTFRFQNDKPWLTQLVAVACLSLAAKVEETHVPLFVDLQVGGSKHLFEAKTVKRMEILVLSTLGWKMNPVTPLSFLDYITRKLGLKGHLGLEFLRRCETVLLSVFADSRFMSYLPSVLATATMMRVVSVVEPGLGEEYQDQVLGILGIDKEKVKECYRVIMEVVTGKNEEGKRGNLKKRKFECIQCSRNDVMEGSFSCDSSCDSLKKSRSQEQLLLKHSNSDFLTIPR* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0254 346 ProSitePatterns Cyclins signature. 86 117 IPR006671 -
Pvu1g0254 346 PANTHER CYCLIN D3.1 PROTEIN 37 323 - -
Pvu1g0254 346 Gene3D - 61 276 - -
Pvu1g0254 346 Pfam Cyclin, N-terminal domain 77 186 IPR006671 -
Pvu1g0254 346 Pfam Cyclin, C-terminal domain 188 289 IPR004367 -
Pvu1g0254 346 PANTHER CYCLINS 37 323 IPR039361 -
Pvu1g0254 346 SMART Cyclin_C_2 188 308 IPR004367 -
Pvu1g0254 346 SMART cyclin_7 91 179 IPR013763 -
Pvu1g0254 346 SUPERFAMILY Cyclin-like 189 285 IPR036915 -
Pvu1g0254 346 CDD CYCLIN 85 178 IPR013763 -
Pvu1g0254 346 Gene3D - 73 186 - -
Pvu1g0254 346 SUPERFAMILY Cyclin-like 57 186 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0254 Pvu-Chr1 2226702 2228463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0254 8 281 Core Cell Cycle Gene Families AT4G34160 50.365 4.16e-92 278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0254 1 2226702 2228463 Pvu2g0157 2 1724756 1726646 ECH
Pvu1g0254 1 2226702 2228463 Pvu3g2475 3 46363155 46365135 ECH
Pvu1g0254 1 2226702 2228463 Pvu7g0392 7 3071377 3073726 ECH
Pvu1g0254 1 2226702 2228463 Pvu1g0254 1 2226702 2228463 ECH
Pvu1g0254 1 2226702 2228463 Pvu9g0696 9 11553719 11555872 PCT