Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0242 ATGGTAGTTAATTTACTCATGGAATATAGGGATCACTGTTGCTCCAACGATTCAACCATCACCAACAGAACAAGAACCAGAAGCAGAAGCCCCAGAACAACCTTGGACAAATCCAAGAACCAACACCACCACGAGAAACCTATGAAGCCGTACCGAGGAATACGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATCAGAGAACCGAACAAGAGGTCCAGAATTTGGTTGGGCTCGTACACCACGCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTTTTCTACCTCCGAGGTCCCTCCGCGCGCCTCAATTTCCCCGAACTTTTGTTCCAGGACGAGGCCGACGGCGCTAACGACGACGATTCCGTGAACATGTCAGCTGATTCCATCCGCCGCAAAGCCACGCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCGCCATCACGCGCCTTCGCACAACCCGACCCAAATCTCTCTGAAACCCGACTTGAACGAGTTCCCGAAACTCGAAGACCTTCAAGATTGA 537 0.5512 MVVNLLMEYRDHCCSNDSTITNRTRTRSRSPRTTLDKSKNQHHHEKPMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDEADGANDDDSVNMSADSIRRKATQVGARVDALQTALRHHAPSHNPTQISLKPDLNEFPKLEDLQD* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0242 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 176 - -
Pvu1g0242 178 MobiDBLite consensus disorder prediction 19 48 - -
Pvu1g0242 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 13 176 - -
Pvu1g0242 178 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Pvu1g0242 178 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Pvu1g0242 178 PRINTS Ethylene responsive element binding protein signature 89 109 IPR001471 GO:0003700|GO:0006355
Pvu1g0242 178 MobiDBLite consensus disorder prediction 29 43 - -
Pvu1g0242 178 Pfam AP2 domain 51 99 IPR001471 GO:0003700|GO:0006355
Pvu1g0242 178 MobiDBLite consensus disorder prediction 152 178 - -
Pvu1g0242 178 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Pvu1g0242 178 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Pvu1g0242 178 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Pvu1g0242 178 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0242 Pvu-Chr1 2101326 2102436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0242 49 152 AP2-EREBP Transcription Factor Family AT5G67190 70.370 1.30e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu1g0242 AP2 3.1e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0242 1 2101326 2102436 Pvu1g0242 1 2101326 2102436 ECH