Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0239 ATGGAAGACCAACCGAACGATGCACTACCTCCTGGTTACCGGTTCTACCCGTCCGAAGAGGTTCTCATCCGCTATTACTTAACCAAGAAGAACGAGAACCGGGCGGGGGGGTTCAACGGTTCTGATTTGATCAAGGAACTGAACCTGTACGATCACGACCCCTTCGAATTACCGGACGCTGCGTGCTTTCCGTACGGTTACCGAGGGAGGAAGAAGCATTGGTTCTGTTACACTGTTAAAGAGACCAAACGCGGAACCAGAAAGGTCAAAAGCGGGTTCTGGCTCCGGAAGGGAAGGGTTCGGGAAATTCGCGATAACGGTGGGATTGGAAACGCTGTTTTAGGCACCAGGTCGCGTTTCGTTTTCTACGTCGGGAATTCGCTGAAAAACGCTACCAGAACGGATTGGATTTTGTACGAGTACGCGTTGGTTGACCAAATTCTGGCTTCGCTCGTGCTCTGTCGTGTGGTGAATAAGCTTCATCATAAGAATAGTCCGTCGGAAATTGGTCGCAGTTGTTGTGCTGAAGAGAGTGCCGCTGTGGCGGTGCGTCACGTTGGTGTTCAGCATGATGGATGCGTGGGAGGTGATGTTGATGAAGTTCAGGTGCGTGATGATGGCTTTGTTAATAGAGAGACTGAAGCTGCTGAGAATCCAATTAGGTGTGGTGGTGAACATGATCATGCTGCACCTGTTTCAGTTGCTCAGGGAAGTCAACCGGTTCAGGAAAGACTTTCTGGACTTCCCTCTGGCAGTGGATTGTTCATTGAAGCCGTGACATCTCATCAACATATGCTTTCCATTCTAGAGGAGGATTTCATAGAATTGAATGATATTGTATGA 843 0.4911 MEDQPNDALPPGYRFYPSEEVLIRYYLTKKNENRAGGFNGSDLIKELNLYDHDPFELPDAACFPYGYRGRKKHWFCYTVKETKRGTRKVKSGFWLRKGRVREIRDNGGIGNAVLGTRSRFVFYVGNSLKNATRTDWILYEYALVDQILASLVLCRVVNKLHHKNSPSEIGRSCCAEESAAVAVRHVGVQHDGCVGGDVDEVQVRDDGFVNRETEAAENPIRCGGEHDHAAPVSVAQGSQPVQERLSGLPSGSGLFIEAVTSHQHMLSILEEDFIELNDIV* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0239 280 PANTHER NAC DOMAIN-CONTAINING PROTEIN 21/22-LIKE ISOFORM X1 6 280 - -
Pvu1g0239 280 SUPERFAMILY NAC domain 8 159 IPR036093 GO:0003677|GO:0006355
Pvu1g0239 280 Pfam No apical meristem (NAM) protein 10 143 IPR003441 GO:0003677|GO:0006355
Pvu1g0239 280 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Pvu1g0239 280 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 280 - -
Pvu1g0239 280 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0239 Pvu-Chr1 2063239 2066775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0239 9 183 NAC Transcription Factor Family AT1G32510 31.414 1.07e-22 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu1g0239 NAM 1.5e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0239 1 2063239 2066775 Pvu1g0239 1 2063239 2066775 ECH