Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0238 ATGCAAGGGCAGAGAGGCACAATTGGTTCCTTGCAAGAAACCATAGAATTTGATACATCAAGTACTGCTACAGTTGAGCAACATATTTTCTGGAACAATATGCGTAATCCTTCAGAGAATCATTTTGCACTTCCCCCCAGTGATTTAAACCCGTCGTACGCAAATCCTATAAACCATGAATGGCAGAACCTTAGTGGATGGAGCCTAGGTGAGCCAAGTTCCAGTAATACTCAGAATGAGGTTACTAACAATGAGCAGAAAGGAGAGGTAGGATTATCATCTTCAATAAGTTCTGGTCCTATAGCTGGTCCAAGACTTGAAGAGAGGCGCTTTGAACCAAACAATACTTTTTCATTGGACAATGTCAATACAAGTTCCATGTATATGCGCAGCTCCAATTCTCACTTGGTGCCTCAGAATCTCAACCTAAATGCAAGCTTAGCAGATAGTGTCACTGTCACTGATAATGGCTATCGTGTGGAACATCCTAACTTGAACAAGTCTAGTGGACCGGTAAATGAGCATCTTCCACCTTCAATTGGTTCTGGTCCTTTTCTGCTTCCTTCTGGCACTAATGGCTTTTTGGTTGAGGATACTGATGGTAGGCCTGGTTGTTCTCTAGACACCCGCCGTGTATCTTGTAAAAGAAAGGCTGTTGAACGAAGTGTTGGGCAATCTTCAGGTGGTGGAAGTTCTAGCTATACTCAGCATACAGATGGTAGTACTTGGAACACTCTTCCTACTCAGGATTATGGTGGAAGCAGTTTTAACAGATCTGCCTCAACAGAACAGGTAAATGCAAGACTCTGTCTGAGTACTGGGGATGGAGCTTCTGAGAGCATTCCTTGGTCAAATGTTGCAGGAAGCTCAGAAAACTTCCACAGGAATTTTCGTGTGAGGATAAATCCTTCAAGTCAACAAATTTCAGTTCCCCCCCCTGCAATCTCAAGTGGGAGTGTTATTAGGAATTCTGGTGTTTCTTCATCCTCTCCAATGTTGCAAAGGTTTCACCCTGTTGATAATTCTTTGGACTTGAGGTCAGCACCACCTGTTGATACTATGGTTCCTCAAAGCCAGCCCCTTGTAATCCATGTTCCAGCTTTACCAAGGAATGTGCAGCCATTCAGGTGGAATGGAGGTTCAAGCTCAGCAAACAATCATCCTTCAAACCCAGTTATATGTGCAGATAGAAATAATTTACCAAACGAGGAACCAAGTTCAAGAAGTATGCCTAGAAACATTGTAGAATACCCCATGTTTGTGCCTGCAACCAATTTAAGAAATGTGGTTAGAAATCCAGCTAGAGCTTCAAATAGTGCAAATTTAAGTATTCCAGGAAATGTTGGTTCTTTATCGAGGGCAGGCTCAAATTCAGCTGTCAATCCACCATCTGCTCCGGCGTGGGTTTCTCGCCCAAATCCTCAGCAGTATCCTCGCAGGTTATCAGAATATGTTCGCCGGTCTTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGCAACAATTATGCTTCCTTCCGTGGCCCTTCTACTTCATCTGGGGTAAACCCATTTGAGAGGCAAGGTGATGGTGAATTTGGAATTCAGTATTCTTTACGATCATTGGCTGCTGCTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTATTGGGCCTCATGCGTAGGGGTGGGAACCTACGATTTGAGGATGTTATGATCTTGGACCATTCAGTGTTCGCTGGAATTGCTGATATTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGCTATTGGCTTTGGAAGAACGCATTGGAAATGTGAGCACTGGCTTGAATGAGGAGACCATATTAAAACACATGAAAAATAAGAAGTATTCAGCTAAACCAGGTTCTCAGCATGAGGCAGAACCCTGTTGTGTTTGTCAGGAGGAGTACAAAGATGGAGATGCTTTAGGGTCACTGGATTGTGGGCATGATTACCATACCGAATGCATTAAGCAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACAGGGTTGAAAACATGA 2067 0.434 MQGQRGTIGSLQETIEFDTSSTATVEQHIFWNNMRNPSENHFALPPSDLNPSYANPINHEWQNLSGWSLGEPSSSNTQNEVTNNEQKGEVGLSSSISSGPIAGPRLEERRFEPNNTFSLDNVNTSSMYMRSSNSHLVPQNLNLNASLADSVTVTDNGYRVEHPNLNKSSGPVNEHLPPSIGSGPFLLPSGTNGFLVEDTDGRPGCSLDTRRVSCKRKAVERSVGQSSGGGSSSYTQHTDGSTWNTLPTQDYGGSSFNRSASTEQVNARLCLSTGDGASESIPWSNVAGSSENFHRNFRVRINPSSQQISVPPPAISSGSVIRNSGVSSSSPMLQRFHPVDNSLDLRSAPPVDTMVPQSQPLVIHVPALPRNVQPFRWNGGSSSANNHPSNPVICADRNNLPNEEPSSRSMPRNIVEYPMFVPATNLRNVVRNPARASNSANLSIPGNVGSLSRAGSNSAVNPPSAPAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSSNNYASFRGPSTSSGVNPFERQGDGEFGIQYSLRSLAAAGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSVFAGIADIHDRHRDMRLDVDNMSYELLALEERIGNVSTGLNEETILKHMKNKKYSAKPGSQHEAEPCCVCQEEYKDGDALGSLDCGHDYHTECIKQWLMHKNLCPICKTTGLKT* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0238 688 MobiDBLite consensus disorder prediction 378 409 - -
Pvu1g0238 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 685 IPR013083 -
Pvu1g0238 688 MobiDBLite consensus disorder prediction 224 259 - -
Pvu1g0238 688 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 687 - -
Pvu1g0238 688 MobiDBLite consensus disorder prediction 452 475 - -
Pvu1g0238 688 MobiDBLite consensus disorder prediction 64 100 - -
Pvu1g0238 688 ProSiteProfiles Zinc finger RING-type profile. 641 682 IPR001841 -
Pvu1g0238 688 SUPERFAMILY RING/U-box 634 684 - -
Pvu1g0238 688 MobiDBLite consensus disorder prediction 378 410 - -
Pvu1g0238 688 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 687 IPR045191 GO:0061630
Pvu1g0238 688 MobiDBLite consensus disorder prediction 496 517 - -
Pvu1g0238 688 Pfam Ring finger domain 641 682 IPR001841 -
Pvu1g0238 688 CDD RING-H2_TTC3 640 682 - -
Pvu1g0238 688 MobiDBLite consensus disorder prediction 64 116 - -
Pvu1g0238 688 MobiDBLite consensus disorder prediction 216 259 - -
Pvu1g0238 688 SMART ring_2 641 681 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0238 Pvu-Chr1 2045803 2051285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0238 1 688 C3H Transcription Factor Family AT2G15530 33.068 4.14e-83 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0238 1 2045803 2051285 Pvu1g0238 1 2045803 2051285 ECH
Pvu1g0238 1 2045803 2051285 Pvu9g0680 9 11275163 11283098 PCT