Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0237 ATGGCTGGTGACATGCACCAACCACAACCCTCTCTTGCCAGAACCTTCCCTCCTAATTCAGAAGACTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCCCACTAGGAATGGACCCTAATCATTCTGCTTCTGATTTCACCCCACACACCAACACCAACAACCCTCTTCCTTCCTCTCCCTCAACTTTCCATTTCTCTCACCCCATCCCTGTCACTCATGCCACCACCTTCAAACAACACAACAATAATCACAACCCTGATTTCACTTCTTCTGCTGAGAGTGTGGAGGCAAGGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGCAGGATTAACGAGAAAATGAAAGCCTTGCAGAAATTAATTCCAAATTCTAACAAGACAGACAAAGCTTCGATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTTAGCTTGCATCCAATGTCTTTGCCAGGAGAACAAAGACCCATGATAATGCCTCAGACTGGGTTGAACCTTGATGAGAGTGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAAAGAAGAAAACTTGATTCGGCATGCTTTTAGTTTTCCGAAGCAATGCAGCATCTCAGACCAGTCTGTTGTTGTGCCCTCAGTGACAAGATTAGCTACTTCGAATGCCCCATCCACTTTTCATCCTTCTATTAAGGATACACTCTACGACAGCATGCCCCAACTGTTTATGGATGCACCAAAGATTGGGAAGGACCCTTCTCCAGACTTGTCTTAA 864 0.4444 MAGDMHQPQPSLARTFPPNSEDFSTFFNQLLHNPPPLGMDPNHSASDFTPHTNTNNPLPSSPSTFHFSHPIPVTHATTFKQHNNNHNPDFTSSAESVEARKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGFSLHPMSLPGEQRPMIMPQTGLNLDESDGLQNSTSAIASSSKEENLIRHAFSFPKQCSISDQSVVVPSVTRLATSNAPSTFHPSIKDTLYDSMPQLFMDAPKIGKDPSPDLS* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0237 287 SMART finulus 120 169 IPR011598 GO:0046983
Pvu1g0237 287 MobiDBLite consensus disorder prediction 1 126 - -
Pvu1g0237 287 PANTHER TRANSCRIPTION FACTOR SPATULA 21 263 - -
Pvu1g0237 287 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 21 263 IPR031066 -
Pvu1g0237 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 174 IPR036638 GO:0046983
Pvu1g0237 287 MobiDBLite consensus disorder prediction 112 126 - -
Pvu1g0237 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
Pvu1g0237 287 Pfam Helix-loop-helix DNA-binding domain 118 164 IPR011598 GO:0046983
Pvu1g0237 287 MobiDBLite consensus disorder prediction 12 31 - -
Pvu1g0237 287 MobiDBLite consensus disorder prediction 45 94 - -
Pvu1g0237 287 Gene3D - 109 173 IPR036638 GO:0046983
Pvu1g0237 287 CDD bHLH_AtPIF_like 114 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0237 Pvu-Chr1 2035684 2039406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0237 113 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 66.957 1.61e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g0237 HLH 1.9e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0237 1 2035684 2039406 Pvu1g0237 1 2035684 2039406 ECH