Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0234 ATGGCTCTTCTACTTGACAACTGTGACAGCATTTTGCTCTCTTTGGACACACACAAATCAGTTCCTGCACCTTTCCTTACCAAAACATACCAACTTGTGGACGACCCCTCCACCGACCACATAGTCTCTTGGGGTGAAGACCACGCCACCTTCGTTGTTTGGCGCCCCCCAGAGTTTGCTAGGGACCTTCTCCCCAACTACTTCAAACACAACAACTTCTCAAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGATTGTGCCTGATAGGTGGGAGTTCGCAAACGAGTTCTTCAAGAAAGGAGAGAAGCAGTTGTTGTGCGAGATCCACAGAAGGAAAACCCATCAGCAGCATCACCAACAACAAGTGCACCATCATCAGTTTGGGCTCAATGTTCCCCCTTTCTTTCCCTTCCACAACACACTCACTGTGTCCCCTCCCCATGACTCGGACGAGTTACCCAATTGGTGCGACTCACCCCCAAGAGCAGTTACAACTGGAAACAACATCATCAACAACAACAGCCACAACACTGTCACTGCACTTTCTGAAGACAACGAAAGACTTAGGAGAAGCAACAACATGCTCATGTCAGAGCTCGCACACATGAAGAAGCTTTACAACGACATCATCTACTTTGTTCAGAACCATGTCAAACCCGTTGCTCCAAGCAACACTTACCCTTCTCTTCTACTATGCAGTAACAACAACAACAGTCACATAAATAACGTGTCGGTGAAACAGTTTGTGGGATGTTATTCAAACAACACTAAGCAAGCGCGTGCTGTGAACTCTCCAACCAACAGCTCCATCACCATTGTTGAAGAAGAACCTAGCAGTAACAGCTGCAAGACGAAGCTTTTCGGGGTGTCTCTTCAATCCAAGAAAAGGGTGCACCCCGAGTACGGATCTAACAATCTTCAAACTTCAGAAACCAATAAGTCGCGTTTGGTGGTGGAAAATGATGAATTCTTTGGCTTGAATCTCATGCCCCCTTCAACTTCTTTCTTATAG 1020 0.4647 MALLLDNCDSILLSLDTHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDHATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKQLLCEIHRRKTHQQHHQQQVHHHQFGLNVPPFFPFHNTLTVSPPHDSDELPNWCDSPPRAVTTGNNIINNNSHNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNTYPSLLLCSNNNNSHINNVSVKQFVGCYSNNTKQARAVNSPTNSSITIVEEEPSSNSCKTKLFGVSLQSKKRVHPEYGSNNLQTSETNKSRLVVENDEFFGLNLMPPSTSFL* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0234 339 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g0234 339 PANTHER BNAC06G00310D PROTEIN 12 336 - -
Pvu1g0234 339 Gene3D - 17 116 IPR036388 -
Pvu1g0234 339 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 336 IPR027725 -
Pvu1g0234 339 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g0234 339 Coils Coil 181 201 - -
Pvu1g0234 339 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g0234 339 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g0234 339 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g0234 339 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu1g0234 339 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0234 Pvu-Chr1 1996915 1998671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0234 19 336 HSF AT1G46264 58.209 4.54e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu1g0234 HSF_DNA-bind 7.2e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0234 1 1996915 1998671 Pvu1g0234 1 1996915 1998671 ECH
Pvu1g0234 1 1996915 1998671 Pvu9g0678 9 11250307 11251969 PCT