Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0229 ATGTCTCTGTTTCGGTTATTGTGGGCACTACCTTTTCTGTTTCTGTGGATGGTGTGGTCAGAAGCAATTGCTAATGCAAATGATCACGAGATAAAAGGAAACATCATAGGAGAGAGCTCAATATTGAAGTCCAAGATTGTTGTGAACATTGGAGCAGCCATAGATTTGAATTCTCGTGTGGGAAAGGAACAGAAGATAGCAATGGAAGTTGCAATTGAAGATGTGAATCGAGAGAGTTGCTATGAGCTTGCCTTGAACTACAGTTATAACATTCATCGGAACCCATCATCTCCCACTATGTTGGCTGCGGATCTTGCAAACAGCAAACAAGTGGAAGTTGTGGTAGGAACAAATCTCGATGCAGCAACATTATTCCTCTGGATTGATGAAAACTCAAAGGATGTTCCCATCATATCTCTAACCTCAACAGCTACTCCAGAAGTAACTTCAATCCCATTGCCACACTTCATCCAAATGGGCTATGATGTCACCCTTCACATGCACTGCATTGCTTCCATCATACACCAATTCCATTGGCCAAAGGTTACTGCAATTTATGAACACAACAACCTCTTTGCCTCTCATTCAGACATACTCACAACACTCTCTTACTCTCTACGCCTAGTCAATGTTGAGATCGATCACCATGTTGCTTTTCCTTCAATGGCCATTCTTTCAAACCCAATTGAGAGCATAGAACAAGAGCTCACAAGGCTCAAGAACAAGAGCAATAGGGTGTTCTTGCTTATTCAATCTTCCTTGGAGTTTGCCACTCTGCTATTTGAGAAGGCAAAGCAAATGGGAATGATGGAAAAAGGGTCAGTGTGGATCATTGCAGATGATGTGGCTAACCACCTTGATTCCTTTGATTCTTCTGTCTTTTTCAACATGCAAGGCGTCATGGGGTGCAAAACCAACTTCATGGAAATGAGTCAAACGTTCAAACGTTTCAAGTTCATGTTTAGGAGAAAGTTTGCATTGGAATACCCTGAAGAAGAAAGATCCCAACCGAGTGTCTTTGCTCTCGGGGCTTATGATGCTGTTTGGACCATTGCTAAAGCCTTGGAGAGCTCACAAGTTGGAAGCTTTTCCTTATCAGAAAATATCTTGCGTAGTGATCAAGAGGGTCTCAGTGGGAAGATAAGGTTCAAAGGAAGAATGTTATTGGAACCACCAATGTTTAAGATTGTGAATGTTATTGGAAAAGGTTACAAGGAGTTAGCATATTGGTCAATGGAGCATGGTTTTAGTGAGAGGCTTGTTGAGCATGAGGTGGTGAACACAGCAACAACTAGTGCTGGTTCTGCTAGAATGCTATTAGGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTGCCAAAAGGTTGGGTGTACAATAGTAGTGAGGGAAAGCCTTTGAAAATTGGGGTTCCTGCTGTTGATCCATGTCCTCAGTTTGTGAATGTGAGCCATGATAAGGGACTGAATGAAACCCAATTCACTGGTTTCTCAATCAATGTCTTTGAATCAGTTGTGCAACGCCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTACGATCAGATAGTTGAACATGTCGACAATAAGTACCTTGATGCTGCTGTGGGGGATATCCAAGTGGTGGAACATAGATATGCATTTGCTGAATTCAGTCATCCATATATTGAATCTGGCATAGCCATGGTAGTGAAAGTGAAGCCAGATAGATCCAAAGAAACATGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATGTTAACAGCAGCACTGCATCTGTTCATAGCACTTGTAATCTGGCTCATTGAAGGTGAAAAAAATTCGGAGCTCCAGAGTTTTGGGGCCATTCTCTGGTTTTCTGTCACCACATTATTCTTTATACATAGAGAACCTGTGAATAGCAGCTTGGCCAGAGTAGTGCTAGCACCTTGGTTATTTGCTATTCTGATAGTGACTCAAAGTTTTACAGCGAGCCTTTCATCCATGATGACAGTGTCCCATCTTGAACCAGCTGTGCCTGATATAGAAACACTGCTGAGGACAAATGCAATCATAGGGTGCAATAAGAACACTTTTTTGGTCCATTACTTAGTTGATGAACTCAAGTTCCGGCCACAGAATATCATGGTCTTTGACTCCATCCATGATTTTCCAAGAGCCTTTGAGAACAAAGAAATTGTGGCTTCTTTTACCATTGCCCCTCATGCTGATGTCTTCCTAGCTACCTATTGCAAGGGCTACATCAAAGCAGGACCTACCTTGAAGCTTGGTGGATTAGGCTTTGCATTTCCAAAAGGTTCACGTTTAGCAATTGACATATCCCGAGCAACCTTAAAAGCCATAGAAAGTGGAGAAGTGCAGAAATTAGAAGAGAAGATGTTGTCTACAACTAATTGTGGATCTACCAACAACAAAATACAAAATGAACAACTTGGTCCTCAACCTTTCTTCGGCTTATTTTTCATTTGTGGAACCATTGCTCTCATAGGTTTATTGGCAACCATTGTTCACTTTGTTAGAAGGAATGCAAAAACATTTATGAATTACATATTATTGTCACAGTTACAAATAGGATTGCAAATAATCAGACTTCTAGCTCAAAAGCATGTATACAAGTACAGAAGAAGGAGTGCACCTGCTCAAGATGCAAATAGTGGAGAAAATGTATCTCATAACAATGAGCTAGCTACACCAAGCATTGAGTTTGCAATTTACTACCACACATGA 2739 0.4122 MSLFRLLWALPFLFLWMVWSEAIANANDHEIKGNIIGESSILKSKIVVNIGAAIDLNSRVGKEQKIAMEVAIEDVNRESCYELALNYSYNIHRNPSSPTMLAADLANSKQVEVVVGTNLDAATLFLWIDENSKDVPIISLTSTATPEVTSIPLPHFIQMGYDVTLHMHCIASIIHQFHWPKVTAIYEHNNLFASHSDILTTLSYSLRLVNVEIDHHVAFPSMAILSNPIESIEQELTRLKNKSNRVFLLIQSSLEFATLLFEKAKQMGMMEKGSVWIIADDVANHLDSFDSSVFFNMQGVMGCKTNFMEMSQTFKRFKFMFRRKFALEYPEEERSQPSVFALGAYDAVWTIAKALESSQVGSFSLSENILRSDQEGLSGKIRFKGRMLLEPPMFKIVNVIGKGYKELAYWSMEHGFSERLVEHEVVNTATTSAGSARMLLGSVDWPGGLKTVPKGWVYNSSEGKPLKIGVPAVDPCPQFVNVSHDKGLNETQFTGFSINVFESVVQRLPYHLPFVFVPFYGSYDQIVEHVDNKYLDAAVGDIQVVEHRYAFAEFSHPYIESGIAMVVKVKPDRSKETWMFMDAFTKEMWMLTAALHLFIALVIWLIEGEKNSELQSFGAILWFSVTTLFFIHREPVNSSLARVVLAPWLFAILIVTQSFTASLSSMMTVSHLEPAVPDIETLLRTNAIIGCNKNTFLVHYLVDELKFRPQNIMVFDSIHDFPRAFENKEIVASFTIAPHADVFLATYCKGYIKAGPTLKLGGLGFAFPKGSRLAIDISRATLKAIESGEVQKLEEKMLSTTNCGSTNNKIQNEQLGPQPFFGLFFICGTIALIGLLATIVHFVRRNAKTFMNYILLSQLQIGLQIIRLLAQKHVYKYRRRSAPAQDANSGENVSHNNELATPSIEFAIYYHT* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0229 912 CDD PBP1_GABAb_receptor_plant 49 420 IPR044440 -
Pvu1g0229 912 SUPERFAMILY Periplasmic binding protein-like I 47 456 IPR028082 -
Pvu1g0229 912 Pfam Ligand-gated ion channel 798 828 IPR001320 GO:0015276|GO:0016020
Pvu1g0229 912 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 871 - -
Pvu1g0229 912 Pfam Bacterial extracellular solute-binding proteins, family 3 490 797 IPR001638 -
Pvu1g0229 912 PIRSF IGluLR_plant 2 367 IPR017103 -
Pvu1g0229 912 PIRSF IGluLR_plant 357 901 IPR017103 -
Pvu1g0229 912 Gene3D - 42 164 - -
Pvu1g0229 912 PANTHER GLUTAMATE RECEPTOR 43 871 - -
Pvu1g0229 912 Gene3D - 459 575 - -
Pvu1g0229 912 SMART GluR_14 467 800 IPR001320 GO:0015276|GO:0016020
Pvu1g0229 912 SUPERFAMILY Periplasmic binding protein-like II 445 796 - -
Pvu1g0229 912 Gene3D - 576 705 - -
Pvu1g0229 912 CDD GluR_Plant 464 798 - -
Pvu1g0229 912 Pfam Receptor family ligand binding region 65 400 IPR001828 -
Pvu1g0229 912 Gene3D - 165 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0229 Pvu-Chr1 1952954 1958574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0229 47 844 Ion Channels AT2G17260 29.739 4.52e-113 367