Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0228 ATGGACGGTTACGACGGAACCGTGAGGCTCGGCGCCATTAACCTCAGGCACGATCGCGCCGATTTCGACTCCGGCCCCGACGTTTCCGTCTCCTCGCCGGTCACGCGGCAGAAAGCCGCCGCCGCCAAGCAGTTCATCGAGAATCATTACAAGAACTATCTCCAAGGATTGCAGGATCGCAAAGACAGACGCAGGGCACTGCAGAGGAAAGTGCAAGAATCTCAGATACCGGTTGAGGAGAAGGAGGAAATGATGAGGAACTTGGAGCGCCGAGAAACTGAGTACATGAGGATTCAGAGACGTAAAATTGGAATTGACGACTTCGAACAATTGACGGTGATTGGGAAAGGTGCTTTTGGTGAGGTGAGGCTATGTCGTGCTAAAAGTACGGGCGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGTCGCGGACAGGTTGAACATGTTCGATCTGAGAGAAACTTGCTGGCAGAGGTTGATAGCAGATGCATAGTAAAACTCCATTATTCATTCCAAGATTCGGATTTCCTTTATCTCATCATGGAATATTTACCTGGTGGTGACATTATGACATTGTTAATGAGAGAAGATATTCTTTCTGAAGAAGTTGCTCGCTTCTACATTGCCGAAAGCATTCTTGCTATTAACTCAATACATCAACACAACTATGTACATAGGGATATTAAACCAGATAACCTGATACTGGACAAAAATGGTCATTTGAAGCTTTCAGACTTTGGCTTATGTAAGCCTCTTGATGATAAGTATTCAACAATTTTATTGGAAAATGAAGATCTTACCGGTCAAGAATCAACTAGTGAAACTGAAGCATATTCCGTCTCTCCTTGGTTGATGCCAAAGGAGAAATTACAGCAGTGGAAACGTAACCGGCGTGCATTGGCATACTCAACTGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGCTATGGAATAGAATGCGATTGGTGGTCTCTTGGGGCGATCATGTATGAGATGCTTATTGGGTATCCTCCATTTTGTTCTGACGATCCAAGGATGGCCTGCCGTAAGATTGTTAACTGGAAAACATGCCTGAAATTCCCAGAAGAGCCCAAGATATCAGTTGAAGCAAAGGATTTGATCTGTCGCTTACTGTGTGATGTTGACTCAAGACTAGGAACCAGAGGAATAGAAGAAATTAAGGCTCATCCATGGTTCAAGGGTGTCCAGTGGGACTTGCTTTATGAATTAGAAGCTGCTTTTAAACCTACAGTAACTGGGGATTTAGATACTCAAAATTTTGAGAAGTTTCCCGAAGTAGATGGCCCACCATCTGTAACAGCAACTGTTGGACCATGGCGGAAGATGCTGACATCCAAAGACAACAATTTCATTGGATATACTTTTAAGAAGTCAGACATACTTAAATCACTTGAAAGTTCAGATGTAGATATCAGAGAAAATGGATCATCAAAAGCTCCTTCATTGATTACTTTGTTAGGTCAGATTGATTTGCAAGATACTGTCATACCAGAATCCGACCAGAAGCCAGAAGCTTGA 1566 0.4317 MDGYDGTVRLGAINLRHDRADFDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQIPVEEKEEMMRNLERRETEYMRIQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKSTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEEVARFYIAESILAINSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLENEDLTGQESTSETEAYSVSPWLMPKEKLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMACRKIVNWKTCLKFPEEPKISVEAKDLICRLLCDVDSRLGTRGIEEIKAHPWFKGVQWDLLYELEAAFKPTVTGDLDTQNFEKFPEVDGPPSVTATVGPWRKMLTSKDNNFIGYTFKKSDILKSLESSDVDIRENGSSKAPSLITLLGQIDLQDTVIPESDQKPEA* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0228 521 Coils Coil 78 101 - -
Pvu1g0228 521 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0228 521 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0228 521 SUPERFAMILY Protein kinase-like (PK-like) 85 460 IPR011009 -
Pvu1g0228 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Pvu1g0228 521 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0228 521 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 7 508 - -
Pvu1g0228 521 Gene3D Transferase(Phosphotransferase) domain 1 194 425 - -
Pvu1g0228 521 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Pvu1g0228 521 Pfam Protein kinase C terminal domain 427 471 IPR017892 GO:0004674|GO:0005524|GO:0006468
Pvu1g0228 521 SMART pkinase_C_6 409 473 IPR000961 GO:0004674|GO:0005524|GO:0006468
Pvu1g0228 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 508 - -
Pvu1g0228 521 CDD STKc_NDR_like 106 472 - -
Pvu1g0228 521 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 481 IPR000961 GO:0004674|GO:0005524|GO:0006468
Pvu1g0228 521 Gene3D Phosphorylase Kinase; domain 1 99 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0228 Pvu-Chr1 1942639 1950635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0228 1 509 AGC Kinase Gene Family AT5G09890 77.734 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Pvu1g0228 Pkinase 5.1e-65 CL0016